diff --git a/.conda/meta.yaml b/.conda/meta.yaml index eab3ca88c..ec198d86e 100644 --- a/.conda/meta.yaml +++ b/.conda/meta.yaml @@ -59,7 +59,7 @@ test: - pytest --pyargs scirpy -m "not extra" about: - home: https://scverse.org/scirpy + home: https://scirpy.scverse.org dev_url: https://github.com/scverse/scirpy license: BSD-3 license_family: BSD diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index c7a263303..5e730e898 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -1,5 +1,5 @@ # Contributing We welcome contributions to Scirpy! Please have a look at the [developer -docs](https://scverse.org/scirpy/develop/developer_docs.html) for +docs](https://scirpy.scverse.org/en/latest/contributing.html) for useful information around making a pull-request. diff --git a/README.md b/README.md index c34a5fae1..bcf17c849 100644 --- a/README.md +++ b/README.md @@ -112,6 +112,6 @@ You can cite the scverse publication as follows: [changelog]: https://scirpy.readthedocs.io/latest/changelog.html [link-docs]: https://scirpy.readthedocs.io [link-api]: https://scirpy.readthedocs.io/latest/api.html -[link-tutorial]: https://scverse.org/scirpy/latest/tutorials.html +[link-tutorial]: https://scirpy.scverse.org/en/latest/tutorials.html [Docker]: https://www.docker.com/ [Podman]: https://podman.io/ diff --git a/docs/index.md b/docs/index.md index 210c9c300..f20f6f7f6 100644 --- a/docs/index.md +++ b/docs/index.md @@ -13,5 +13,6 @@ ir-biology glossary contributing.md changelog.md +versions zzz_bibliography ``` diff --git a/docs/versions.rst b/docs/versions.rst new file mode 100644 index 000000000..5e492e726 --- /dev/null +++ b/docs/versions.rst @@ -0,0 +1,23 @@ +Other versions +============== + +.. note:: + **Versions of the documentation ≥v0.13 are hosted on readthedocs and can be accessed via the + sidebar menu at the bottom left.** + +Older versions of the documentation are hosted on GitHub pages for historical reasons and can be accessed via +the following list: + +.. raw:: html + + + diff --git a/src/scirpy/pp/__init__.py b/src/scirpy/pp/__init__.py index 8e0d06851..b472e8c43 100644 --- a/src/scirpy/pp/__init__.py +++ b/src/scirpy/pp/__init__.py @@ -14,8 +14,7 @@ def merge_with_ir(*args, **kwargs): """\ This function has been removed in v0.13. Use MuData instead: mdata = MuData({"gex": adata, "airr": adata_ir}) - See https://scverse.org/scirpy/latest/data-structure.html - """ + See https://scirpy.scverse.org/en/latest/data-structure.html""" ) ) diff --git a/src/scirpy/util/__init__.py b/src/scirpy/util/__init__.py index df85c7455..91ec03829 100644 --- a/src/scirpy/util/__init__.py +++ b/src/scirpy/util/__init__.py @@ -347,7 +347,7 @@ def _check_airr_key_in_obsm(self): dedent( f"""\ No AIRR data found in adata.obsm['{self._airr_key}']. - See https://scverse.org/scirpy/develop/data-structure.html for more info about the scirpy data structure. + See https://scirpy.scverse.org/en/latest/data-structure.html for more info about the scirpy data structure. """ ) )