You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
{{ message }}
This repository has been archived by the owner on May 27, 2024. It is now read-only.
def_parallelize_with_joblib(delayed_objects, *, total=None, **kwargs):
"""Wrapper around joblib.Parallel that shows a progressbar if the backend supports it. Progressbar solution from https://stackoverflow.com/a/76726101/2340703 """try:
returntqdm(Parallel(return_as="generator", **kwargs)(delayed_objects), total=total)
exceptValueError:
logging.info(
"Backend doesn't support return_as='generator'. No progress bar will be shown. ""Consider setting verbosity in joblib.parallel_config"
)
returnParallel(return_as="list", **kwargs)(delayed_objects)
Some of the methods are embarrassingly parallel, e.g. statsmodels, wilcoxon test.
I suggest to use the following snippet from scirpy:
dask
backend, so you get out-of-machine support for free.https://github.com/scverse/scirpy/blob/443e59e6245b917e87972f87df350ae4f429d011/src/scirpy/util/__init__.py#L567-L579
https://github.com/scverse/scirpy/blob/443e59e6245b917e87972f87df350ae4f429d011/src/scirpy/ir_dist/metrics.py#L231-L233
The text was updated successfully, but these errors were encountered: