diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 6c472bae..fb8ecd8f 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -6,12 +6,12 @@ repos:
       - id: prettier
   # Hooks that are run for scripts
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: "2.2.4"
+    rev: "2.4.3"
     hooks:
       - id: pyproject-fmt
         files: ^scripts/
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.9
+    rev: v0.7.0
     hooks:
       - id: ruff
         args: [--fix, --exit-non-zero-on-fix]
diff --git a/scripts/pyproject.toml b/scripts/pyproject.toml
index 974fc358..faac0ec6 100644
--- a/scripts/pyproject.toml
+++ b/scripts/pyproject.toml
@@ -15,6 +15,7 @@ classifiers = [
   "Programming Language :: Python :: 3 :: Only",
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.13",
 ]
 dynamic = [ "version" ]
 dependencies = [
diff --git a/{{cookiecutter.project_name}}/.pre-commit-config.yaml b/{{cookiecutter.project_name}}/.pre-commit-config.yaml
index 6212e6f9..33a101dc 100644
--- a/{{cookiecutter.project_name}}/.pre-commit-config.yaml
+++ b/{{cookiecutter.project_name}}/.pre-commit-config.yaml
@@ -11,11 +11,11 @@ repos:
     hooks:
       - id: prettier
   - repo: https://github.com/tox-dev/pyproject-fmt
-    rev: "2.2.4"
+    rev: "v2.4.3"
     hooks:
       - id: pyproject-fmt
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.9
+    rev: v0.7.1
     hooks:
       - id: ruff
         types_or: [python, pyi, jupyter]
diff --git a/{{cookiecutter.project_name}}/pyproject.toml b/{{cookiecutter.project_name}}/pyproject.toml
index e49773f9..bad7d29f 100644
--- a/{{cookiecutter.project_name}}/pyproject.toml
+++ b/{{cookiecutter.project_name}}/pyproject.toml
@@ -20,6 +20,7 @@ classifiers = [
   "Programming Language :: Python :: 3.10",
   "Programming Language :: Python :: 3.11",
   "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.13",
 ]
 dependencies = [
   "anndata",