From 01eb5c5dc65df2341282527a969bde2069164dfa Mon Sep 17 00:00:00 2001
From: Martin Salinas <ssalinasmartin@gmail.com>
Date: Fri, 18 Aug 2023 15:30:32 +0200
Subject: [PATCH] Update build.yml

---
 .github/workflows/build.yml | 36 +++++++++++++++---------------------
 1 file changed, 15 insertions(+), 21 deletions(-)

diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml
index 0b01a94..fe12e4b 100644
--- a/.github/workflows/build.yml
+++ b/.github/workflows/build.yml
@@ -36,40 +36,34 @@ jobs:
         eval "$(miniconda/bin/conda shell.bash hook)"
         pip3 install --user scipion-installer
         python3 -m scipioninstaller -conda -noXmipp -noAsk scipion
-    
-    # Install scipion-chem
-    - name: Install scipion-chem
-      working-directory: ${{ github.workspace }}/../
-      run: |
-        git clone https://github.com/scipion-chem/scipion-chem.git
-        scipion/scipion3 installp -p scipion-chem --devel
 
+    # Installing scipion-chem
     # Checkout scipion-chem to Pull Request branch if exists, by default stays in devel
-    - name: Conditionally checkout scipion-chem to ${{ github.head_ref }}
-      working-directory: ${{ github.workspace }}/../scipion-chem
+    - name: Install scipion-chem (in branch ${{ github.head_ref }} if exists)
+      working-directory: ${{ github.workspace }}/../
       env:
+        REPO_NAME: scipion-chem
         BRANCH_NAME: ${{ github.head_ref }}
       run: |
+        git clone https://github.com/scipion-chem/$REPO_NAME.git
         if [ $(git ls-remote --heads https://github.com/scipion-chem/scipion-chem.git $BRANCH_NAME | wc -l) -eq 1 ]; then
-          git checkout $BRANCH_NAME
+          cd $REPO_NAME && git checkout $BRANCH_NAME
         fi
+        scipion/scipion3 installp -p $REPO_NAME --devel
 
-    # Install scipion-chem-autodock
-    - name: Install scipion-chem-autodock
-      working-directory: ${{ github.workspace }}/../
-      run: |
-        git clone https://github.com/scipion-chem/scipion-chem-autodock.git
-        scipion/scipion3 installp -p scipion-chem-autodock --devel
-
+    # Installing scipion-chem-autodock
     # Checkout scipion-chem-autodock to Pull Request branch if exists, by default stays in devel
-    - name: Conditionally checkout scipion-chem-autodock to ${{ github.head_ref }}
-      working-directory: ${{ github.workspace }}/../scipion-chem
+    - name: Install scipion-chem-autodock (in branch ${{ github.head_ref }} if exists)
+      working-directory: ${{ github.workspace }}/../
       env:
+        REPO_NAME: scipion-chem-autodock
         BRANCH_NAME: ${{ github.head_ref }}
       run: |
-        if [ $(git ls-remote --heads https://github.com/scipion-chem/scipion-chem-autodock.git $BRANCH_NAME | wc -l) -eq 1 ]; then
-          git checkout $BRANCH_NAME
+        git clone https://github.com/scipion-chem/$REPO_NAME.git
+        if [ $(git ls-remote --heads https://github.com/scipion-chem/scipion-chem.git $BRANCH_NAME | wc -l) -eq 1 ]; then
+          cd $REPO_NAME && git checkout $BRANCH_NAME
         fi
+        scipion/scipion3 installp -p $REPO_NAME --devel
     
     # Check out the repository in the pull request
     - name: Checkout repository