{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":286326001,"defaultBranch":"main","name":"seurat-object","ownerLogin":"satijalab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-08-09T22:21:20.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/8411851?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1722423056.0","currentOid":""},"activityList":{"items":[{"before":"066ba024413f9e326ce416e28770b7cd004984a6","after":"1a140c74b25f0f9755c21032bc1a97c15140b36d","ref":"refs/heads/main","pushedAt":"2024-08-02T20:39:42.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Merge pull request #214 from satijalab/fix/subset_stdassay\n\nFix/subset stdassay","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2375546550\" data-permission-text=\"Title is private\" data-url=\"https://github.com/satijalab/seurat-object/issues/214\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/satijalab/seurat-object/pull/214/hovercard\" href=\"https://github.com/satijalab/seurat-object/pull/214\">#214</a> from satijalab/fix/subset_stdassay"}},{"before":"456e122ed1c4739b19459613b8be223338adf1cf","after":"5fb74ac2a407248c5953d8b59834e60ecbdd29c9","ref":"refs/heads/fix/subset_stdassay","pushedAt":"2024-08-02T20:25:12.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":"62d422a9a9a71ee1f10da2b8e02b3cbb599c15cc","after":"456e122ed1c4739b19459613b8be223338adf1cf","ref":"refs/heads/fix/subset_stdassay","pushedAt":"2024-08-02T17:24:06.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Fix rownames length error, properly\n\nClean up subset.StdAssay","shortMessageHtmlLink":"Fix rownames length error, properly"}},{"before":"ba42a0292c5187ca75abe753b087dbab7b31f434","after":"62d422a9a9a71ee1f10da2b8e02b3cbb599c15cc","ref":"refs/heads/fix/subset_stdassay","pushedAt":"2024-08-02T17:10:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Fix rownames length error, properly\n\nClean up subset.StdAssay","shortMessageHtmlLink":"Fix rownames length error, properly"}},{"before":"58bf437fe058dd78913d9ef7b48008a3e24a306a","after":"066ba024413f9e326ce416e28770b7cd004984a6","ref":"refs/heads/main","pushedAt":"2024-08-01T14:44:11.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Merge pull request #217 from satijalab/basic_ci\n\nAdd basic CI checks","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2439774412\" data-permission-text=\"Title is private\" data-url=\"https://github.com/satijalab/seurat-object/issues/217\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/satijalab/seurat-object/pull/217/hovercard\" href=\"https://github.com/satijalab/seurat-object/pull/217\">#217</a> from satijalab/basic_ci"}},{"before":"4346ae96bd6c9a094bdf51d770346ed682e83525","after":"e856d008d36832445fde1e7e8b5ee463cdf662d3","ref":"refs/heads/basic_ci","pushedAt":"2024-08-01T14:37:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":"b1feaf6205469338a92615009267bfef4dc1a545","after":"4346ae96bd6c9a094bdf51d770346ed682e83525","ref":"refs/heads/basic_ci","pushedAt":"2024-07-31T12:46:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Add matrix strategy to check multiple R versions","shortMessageHtmlLink":"Add matrix strategy to check multiple R versions"}},{"before":"4346ae96bd6c9a094bdf51d770346ed682e83525","after":"b1feaf6205469338a92615009267bfef4dc1a545","ref":"refs/heads/basic_ci","pushedAt":"2024-07-31T10:56:36.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Add website build to integration checks","shortMessageHtmlLink":"Add website build to integration checks"}},{"before":null,"after":"4346ae96bd6c9a094bdf51d770346ed682e83525","ref":"refs/heads/basic_ci","pushedAt":"2024-07-31T10:50:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Add matrix strategy to check multiple R versions","shortMessageHtmlLink":"Add matrix strategy to check multiple R versions"}},{"before":null,"after":"58bf437fe058dd78913d9ef7b48008a3e24a306a","ref":"refs/heads/cran","pushedAt":"2024-07-31T10:21:36.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Merge pull request #205 from satijalab/release/5.0.2\n\nRelease/5.0.2","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2283064214\" data-permission-text=\"Title is private\" data-url=\"https://github.com/satijalab/seurat-object/issues/205\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/satijalab/seurat-object/pull/205/hovercard\" href=\"https://github.com/satijalab/seurat-object/pull/205\">#205</a> from satijalab/release/5.0.2"}},{"before":null,"after":"58bf437fe058dd78913d9ef7b48008a3e24a306a","ref":"refs/heads/main","pushedAt":"2024-07-31T10:21:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Merge pull request #205 from satijalab/release/5.0.2\n\nRelease/5.0.2","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2283064214\" data-permission-text=\"Title is private\" data-url=\"https://github.com/satijalab/seurat-object/issues/205\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/satijalab/seurat-object/pull/205/hovercard\" href=\"https://github.com/satijalab/seurat-object/pull/205\">#205</a> from satijalab/release/5.0.2"}},{"before":null,"after":"ba42a0292c5187ca75abe753b087dbab7b31f434","ref":"refs/heads/fix/subset_stdassay","pushedAt":"2024-06-26T14:14:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Allow `layer` to be only param for subset.StdAssay","shortMessageHtmlLink":"Allow <code>layer</code> to be only param for subset.StdAssay"}},{"before":null,"after":"860d22404b4939ccd94fa7829caf520272a572df","ref":"refs/heads/fix/settingvarfeatures","pushedAt":"2024-06-25T19:04:04.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Gesmira","name":"gesmira","path":"/Gesmira","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/59940281?s=80&v=4"},"commit":{"message":"remove checks","shortMessageHtmlLink":"remove checks"}},{"before":"b6175834d15d37bbf9baf74df57b6f97c9bb450d","after":"a104410dc35609cf6ff697154b76a83794a92c06","ref":"refs/heads/feat/data-on-the-fly","pushedAt":"2024-05-24T17:42:30.000Z","pushType":"push","commitsCount":40,"pusher":{"login":"mojaveazure","name":"Paul Hoffman","path":"/mojaveazure","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11035068?s=80&v=4"},"commit":{"message":"Merge branch 'develop' into feat/data-on-the-fly","shortMessageHtmlLink":"Merge branch 'develop' into feat/data-on-the-fly"}},{"before":null,"after":"09aa817db3cf2779f9e5e982ee8686797d2075e5","ref":"refs/heads/fix/save-seurat-split","pushedAt":"2024-05-15T23:54:45.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mojaveazure","name":"Paul Hoffman","path":"/mojaveazure","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11035068?s=80&v=4"},"commit":{"message":"Move on-disk layers path-by-path rather than layer-by-layer\nIt's possible for multiple layers to work off of the same disk-backed\nobjects; in these cases, moving one layer causes moving the other layers\nto fail as their disk-backed representation no longer exists. This PR\nadjusts `SaveSeuratRds()` to move on-disk layers path-by-path rather\nthan layer-by-layer","shortMessageHtmlLink":"Move on-disk layers path-by-path rather than layer-by-layer"}},{"before":"5dc57045dc70eec31b0700db7a12c26bfa780186","after":"04ee982d64c30a4e68bca1f87cedc331ec418c68","ref":"refs/heads/gh-pages","pushedAt":"2024-05-08T16:17:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deploying to gh-pages from @ satijalab/seurat-object@58bf437fe058dd78913d9ef7b48008a3e24a306a 🚀","shortMessageHtmlLink":"Deploying to gh-pages from @ <a class=\"commit-link\" data-hovercard-type=\"commit\" data-hovercard-url=\"https://github.com/satijalab/seurat-object/commit/58bf437fe058dd78913d9ef7b48008a3e24a306a/hovercard\" href=\"https://github.com/satijalab/seurat-object/commit/58bf437fe058dd78913d9ef7b48008a3e24a306a\"><tt>58bf437</tt></a> 🚀"}},{"before":"6d3c4f7e67eb3ca0c2c505ab9528c7ecb7afd3a7","after":"5dc57045dc70eec31b0700db7a12c26bfa780186","ref":"refs/heads/gh-pages","pushedAt":"2024-05-08T16:14:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Deploying to gh-pages from @ satijalab/seurat-object@58bf437fe058dd78913d9ef7b48008a3e24a306a 🚀","shortMessageHtmlLink":"Deploying to gh-pages from @ <a class=\"commit-link\" data-hovercard-type=\"commit\" data-hovercard-url=\"https://github.com/satijalab/seurat-object/commit/58bf437fe058dd78913d9ef7b48008a3e24a306a/hovercard\" href=\"https://github.com/satijalab/seurat-object/commit/58bf437fe058dd78913d9ef7b48008a3e24a306a\"><tt>58bf437</tt></a> 🚀"}},{"before":"ddd6100e9b25f425e6fc183d0206ba508541039c","after":"58bf437fe058dd78913d9ef7b48008a3e24a306a","ref":"refs/heads/develop","pushedAt":"2024-05-08T16:04:57.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Merge pull request #205 from satijalab/release/5.0.2\n\nRelease/5.0.2","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2283064214\" data-permission-text=\"Title is private\" data-url=\"https://github.com/satijalab/seurat-object/issues/205\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/satijalab/seurat-object/pull/205/hovercard\" href=\"https://github.com/satijalab/seurat-object/pull/205\">#205</a> from satijalab/release/5.0.2"}},{"before":"4d3739bbdb8b801f9adbe542ad179d7dec61cafc","after":"58bf437fe058dd78913d9ef7b48008a3e24a306a","ref":"refs/heads/master","pushedAt":"2024-05-08T15:58:47.000Z","pushType":"pr_merge","commitsCount":58,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Merge pull request #205 from satijalab/release/5.0.2\n\nRelease/5.0.2","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2283064214\" data-permission-text=\"Title is private\" data-url=\"https://github.com/satijalab/seurat-object/issues/205\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/satijalab/seurat-object/pull/205/hovercard\" href=\"https://github.com/satijalab/seurat-object/pull/205\">#205</a> from satijalab/release/5.0.2"}},{"before":"ee5ea0c0b987f574aa27c688ca64de20eff6a5b0","after":"ddd6100e9b25f425e6fc183d0206ba508541039c","ref":"refs/heads/visium-hd","pushedAt":"2024-05-07T21:09:52.000Z","pushType":"push","commitsCount":20,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Merge pull request #204 from satijalab/fix/image_subset\n\nFix/image subset","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2277894951\" data-permission-text=\"Title is private\" data-url=\"https://github.com/satijalab/seurat-object/issues/204\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/satijalab/seurat-object/pull/204/hovercard\" href=\"https://github.com/satijalab/seurat-object/pull/204\">#204</a> from satijalab/fix/image_subset"}},{"before":"098fcfe3fed166fc359970ea90e112e46f6bc7d0","after":"6be58e127f6c8f6dce1ada5ba2b917cfcccdd630","ref":"refs/heads/release/5.0.2","pushedAt":"2024-05-07T16:02:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Fixup cran-comments... again","shortMessageHtmlLink":"Fixup cran-comments... again"}},{"before":"4d9de1744b12f8e0d0f5708475b339a3189878b8","after":"098fcfe3fed166fc359970ea90e112e46f6bc7d0","ref":"refs/heads/release/5.0.2","pushedAt":"2024-05-07T15:43:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Fixup cran-comments.md","shortMessageHtmlLink":"Fixup cran-comments.md"}},{"before":null,"after":"4d9de1744b12f8e0d0f5708475b339a3189878b8","ref":"refs/heads/release/5.0.2","pushedAt":"2024-05-06T16:39:34.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Update cran-comments","shortMessageHtmlLink":"Update cran-comments"}},{"before":"71fff33108c38d258c4676741de7b0c711adee16","after":null,"ref":"refs/heads/fix/image_subset","pushedAt":"2024-05-04T02:51:52.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mojaveazure","name":"Paul Hoffman","path":"/mojaveazure","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11035068?s=80&v=4"}},{"before":"ceafa1e080faaad3e5558921b3e5c5ab8a24826f","after":"ddd6100e9b25f425e6fc183d0206ba508541039c","ref":"refs/heads/develop","pushedAt":"2024-05-04T01:19:36.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Merge pull request #204 from satijalab/fix/image_subset\n\nFix/image subset","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2277894951\" data-permission-text=\"Title is private\" data-url=\"https://github.com/satijalab/seurat-object/issues/204\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/satijalab/seurat-object/pull/204/hovercard\" href=\"https://github.com/satijalab/seurat-object/pull/204\">#204</a> from satijalab/fix/image_subset"}},{"before":"4f89579a50582009877b432a867154a5c346eb40","after":"71fff33108c38d258c4676741de7b0c711adee16","ref":"refs/heads/fix/image_subset","pushedAt":"2024-05-03T21:40:42.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":"ed0fb406c60e86e7b0fd5df6cc84e900f623696c","after":"ceafa1e080faaad3e5558921b3e5c5ab8a24826f","ref":"refs/heads/develop","pushedAt":"2024-05-03T18:08:38.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"mojaveazure","name":"Paul Hoffman","path":"/mojaveazure","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11035068?s=80&v=4"},"commit":{"message":"Merge pull request #189 from maxim-h/patch-1\n\nAdd warning if layer is absent from assay","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2197969283\" data-permission-text=\"Title is private\" data-url=\"https://github.com/satijalab/seurat-object/issues/189\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/satijalab/seurat-object/pull/189/hovercard\" href=\"https://github.com/satijalab/seurat-object/pull/189\">#189</a> from maxim-h/patch-1"}},{"before":"d26593c03ff254be89f73a5ff0552f8efa0d0e02","after":"4f89579a50582009877b432a867154a5c346eb40","ref":"refs/heads/fix/image_subset","pushedAt":"2024-05-03T15:15:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Add PR number to NEWS","shortMessageHtmlLink":"Add PR number to NEWS"}},{"before":"b7811b5f26b419778f4cab78ebef125335dded14","after":"d26593c03ff254be89f73a5ff0552f8efa0d0e02","ref":"refs/heads/fix/image_subset","pushedAt":"2024-05-03T15:11:12.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}},{"before":null,"after":"b7811b5f26b419778f4cab78ebef125335dded14","ref":"refs/heads/fix/image_subset","pushedAt":"2024-05-03T15:10:50.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dcollins15","name":"David Collins","path":"/dcollins15","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/23369610?s=80&v=4"},"commit":{"message":"Bump version","shortMessageHtmlLink":"Bump version"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEkIXg7gA","startCursor":null,"endCursor":null}},"title":"Activity · satijalab/seurat-object"}