diff --git a/data/azimuth_references.yaml b/data/azimuth_references.yaml index 8d8f273d..f3c04d60 100644 --- a/data/azimuth_references.yaml +++ b/data/azimuth_references.yaml @@ -139,3 +139,138 @@ download: "https://cellxgene.cziscience.com/collections/2f75d249-1bec-459b-bf2b-b86221097ced" snakemake: "https://github.com/satijalab/azimuth-meta-analysis/tree/master/human_lung" cellxgene: "https://cellxgene.cziscience.com/e/f72958f5-7f42-4ebb-98da-445b0c6de516.cxg/" + +- title: Human Kidney + applink: http://t6e1csrfi8tn8b6.satijalab.org/app/azimuth-kidney + image: kidney_revised.png + snakemake: + zenodo: + vitessce: + modalities: RNA + unit: Cells + nunit: 1 + species: Human + demodata: + dataref: + details: | + Script: `/home/jainj/kidney/make_ref.R` in 02 // + Reference dir: `/home/jainj/new-refs/kidney/` in 02 + +- title: Human Liver + applink: http://t6e1csrfi8tn8b6.satijalab.org/app/azimuth-liver-revised + image: liver_revised.png + snakemake: + zenodo: + vitessce: + modalities: RNA + unit: Cells + nunit: 1 + species: Human + demodata: + dataref: + details: | + Script: `/home/jainj/liver/Aizarani/make_aiz.R` in 02 // + Reference dir: `/home/jainj/new-refs/liver/` in 02 // + Full object: `/home/jainj/liver/fullref.rds` in 02 + +- title: Human Skin + applink: http://t6e1csrfi8tn8b6.satijalab.org/app/azimuth-skin-revised + image: skin_revised.png + snakemake: + zenodo: + vitessce: + modalities: RNA + unit: Cells + nunit: 1 + species: Human + demodata: + dataref: + details: | + Script: `/home/jainj/skin/make_ref.R` in 02 // + Reference dir: `/home/jainj/new-refs/skin/` in 02 // + Full object: `/home/jainj/skin/fullref.rds` in 02 + +- title: Human Retina + applink: http://t6e1csrfi8tn8b6.satijalab.org/app/azimuth-retina-revised + image: retina_revised.png + snakemake: + zenodo: + vitessce: + modalities: RNA + unit: Cells + nunit: 1 + species: Human + demodata: + dataref: + details: | + Script: `/home/jainj/make_retina.R` in 02 // + Reference dir: `/home/jainj/new-refs/retina-revised/` in 02 // + Full object: `/home/jainj/retina_fullref.rds` in 02 + +- title: Human Spleen + applink: http://t6e1csrfi8tn8b6.satijalab.org/app/azimuth-spleen-revised + image: spleen_revised.png + snakemake: + zenodo: + vitessce: + modalities: RNA + unit: Cells + nunit: 1 + species: Human + demodata: + dataref: + details: | + Script: `/home/jainj/spleen/make_ref.R` in 02 // + Reference dir: `/home/jainj/new-refs/spleen-revised/` in 02 // + Full object: `/home/jainj/spleen/fullref.rds` in 02 + +- title: Human Colon + applink: http://t6e1csrfi8tn8b6.satijalab.org/app/azimuth-colon-revised + image: colon_revised.png + snakemake: + zenodo: + vitessce: + modalities: RNA + unit: Cells + nunit: 1 + species: Human + demodata: + dataref: + details: | + Script: `/home/jainj/colon/make_ref.R` in 02 // + Reference dir: `/home/jainj/new-refs/colon-revised/` in 02 // + Full object: `/home/jainj/colon/fullref.rds` in 02 + +- title: Human Esophagus + applink: http://t6e1csrfi8tn8b6.satijalab.org/app/azimuth-esophagus-revised + image: esophagus_revised.png + snakemake: + zenodo: + vitessce: + modalities: RNA + unit: Cells + nunit: 1 + species: Human + demodata: + dataref: + details: | + Script: `/home/jainj/esophagus/make_madisoon.R` in 02 // + Reference dir: `/home/jainj/new-refs/esophagus-revised/` in 02 // + Full object: `/home/jainj/esophagus/fullref.rds` in 02 + +- title: Human Heart + applink: http://t6e1csrfi8tn8b6.satijalab.org/app/azimuth-heart + image: heart_revised.png + snakemake: + zenodo: + vitessce: + modalities: RNA + unit: Cells + nunit: 1 + species: Human + demodata: + dataref: + details: | + (Note: still runs on older version of Azimuth -- reference dataset is undecided) // + Reference dir: `/home/jainj/new-refs/heart-demo-v4/` in 02 // + Full object: `/home/jainj/heart/Teichmann/teichintg.rds` in 02 diff --git a/static/img/references/colon_revised.png b/static/img/references/colon_revised.png new file mode 100644 index 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