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Flagged as bacteria for review #58

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DLBPointon opened this issue Sep 3, 2024 · 1 comment

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DLBPointon commented Sep 3, 2024

Gritola 5th

DLBPointon assigned eeaunin

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DLBPointon commented Sep 5, 2024

To make decon more aggresive.

Genome = get top scaffolds, calc coverage, and use as the TARGET_COV to compare against with coverage of putative contamination.

Tiara = classed as bacteria -> remove

Look at standard deviations from coverage and see how many more scaffolds get removed and whether they are true contamination.

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