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In the future we could change the BLAST code so that it wouldn't need the accession2taxid files and the GET_LINEAGE_FOR_TOP module. The accession2taxid files were needed in the past because the nt BLAST database at /data/blastdb/Supported/NT didn't have built-in taxonomy. But when using the v5 databases with built-in taxonomy like this version of ASCC does, it should be possible to get BLAST hit taxid's directly from BLAST's output and circumvent the need for the accession2taxid database files and the https://github.com/sanger-tol/ascc/blob/dp24_btk_datasets/bin/get_lineage_for_top.py script
The text was updated successfully, but these errors were encountered:
Description of feature
In the future we could change the BLAST code so that it wouldn't need the
accession2taxid
files and theGET_LINEAGE_FOR_TOP
module. Theaccession2taxid
files were needed in the past because the nt BLAST database at/data/blastdb/Supported/NT
didn't have built-in taxonomy. But when using the v5 databases with built-in taxonomy like this version of ASCC does, it should be possible to get BLAST hit taxid's directly from BLAST's output and circumvent the need for theaccession2taxid
database files and the https://github.com/sanger-tol/ascc/blob/dp24_btk_datasets/bin/get_lineage_for_top.py scriptThe text was updated successfully, but these errors were encountered: