diff --git a/.github/workflows/release.yml b/.github/workflows/release.yml index aa9664d..0a3a4d8 100755 --- a/.github/workflows/release.yml +++ b/.github/workflows/release.yml @@ -14,7 +14,7 @@ jobs: - name: Set up Python uses: actions/setup-python@v2 with: - python-version: 3.7 + python-version: 3.9 - name: Install pypa/build run: >- python -m diff --git a/setup.py b/setup.py index 4a7d215..aa62ec6 100755 --- a/setup.py +++ b/setup.py @@ -32,7 +32,7 @@ requirements = { "base": [ # 'roux' - "roux @ git+https://github.com/rraadd88/roux.git@master", + "roux==0.1.1", ## requirements from roux # 'seaborn', # 'numpy>=1.17.3', @@ -62,7 +62,7 @@ "gui": [ "mercury==2.3.7", "dna_features_viewer==3.1.3", - "chrov @ git+https://github.com/rraadd88/chrov.git@main", + "chrov==0.0.2", ], ## development and maintenance "dev": [ @@ -133,7 +133,7 @@ def run(self): include_package_data=True, entry_points={ "console_scripts": [ - "roux = beditor.run:parser.dispatch", + "beditor = beditor.run:parser.dispatch", ], }, cmdclass={"install": InstallCommand}, diff --git a/tests/test_run.py b/tests/test_run.py index 8014ab5..7d5c86b 100755 --- a/tests/test_run.py +++ b/tests/test_run.py @@ -21,47 +21,47 @@ def test_base_positions(): force=True, ) -# def test_base_regions(): -# set_wd() -# return cli( -# config_path='inputs/mutations/base/regions.yml', -# verbose='INFO',#'DEBUG', -# skip=['Visualize'], # skipped because interactive -# force=True, -# ) +def test_base_regions(): + set_wd() + return cli( + config_path='inputs/mutations/base/regions.yml', + verbose='INFO',#'DEBUG', + skip=['Visualize'], # skipped because interactive + force=True, + ) -# def test_base_regions(): -# set_wd() -# return cli( -# config_path='inputs/mutations/base/points.yml', -# verbose='INFO',#'DEBUG', -# skip=['Visualize'], # skipped because interactive -# force=True, -# ) +def test_base_regions(): + set_wd() + return cli( + config_path='inputs/mutations/base/points.yml', + verbose='INFO',#'DEBUG', + skip=['Visualize'], # skipped because interactive + force=True, + ) -# def test_protein_positions(): -# set_wd() -# return cli( -# config_path='inputs/mutations/protein/positions.yml', -# verbose='INFO',#'DEBUG', -# skip=['Visualize'], # skipped because interactive -# force=True, -# ) +def test_protein_positions(): + set_wd() + return cli( + config_path='inputs/mutations/protein/positions.yml', + verbose='INFO',#'DEBUG', + skip=['Visualize'], # skipped because interactive + force=True, + ) -# def test_protein_regions(): -# set_wd() -# return cli( -# config_path='inputs/mutations/protein/regions.yml', -# verbose='INFO',#'DEBUG', -# skip=['Visualize'], # skipped because interactive -# force=True, -# ) +def test_protein_regions(): + set_wd() + return cli( + config_path='inputs/mutations/protein/regions.yml', + verbose='INFO',#'DEBUG', + skip=['Visualize'], # skipped because interactive + force=True, + ) -# def test_protein_regions(): -# set_wd() -# return cli( -# config_path='inputs/mutations/protein/points.yml', -# verbose='INFO',#'DEBUG', -# skip=['Visualize'], # skipped because interactive -# force=True, -# ) \ No newline at end of file +def test_protein_regions(): + set_wd() + return cli( + config_path='inputs/mutations/protein/points.yml', + verbose='INFO',#'DEBUG', + skip=['Visualize'], # skipped because interactive + force=True, + ) \ No newline at end of file