diff --git a/docs/404.html b/docs/404.html index 017fb02..621b8ed 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/CONDUCT.html b/docs/CONDUCT.html index eab3909..aff18a9 100644 --- a/docs/CONDUCT.html +++ b/docs/CONDUCT.html @@ -17,7 +17,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/FAQs.html b/docs/FAQs.html index 691e1c1..2d1ea6e 100644 --- a/docs/FAQs.html +++ b/docs/FAQs.html @@ -17,7 +17,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/articles/BioMart_Examples.html b/docs/articles/BioMart_Examples.html index d747bb7..41fbe9e 100644 --- a/docs/articles/BioMart_Examples.html +++ b/docs/articles/BioMart_Examples.html @@ -33,7 +33,7 @@ biomartr - 1.0.3 + 1.0.4 @@ -92,7 +92,7 @@

Ensembl BioMart Examples

-

2023-05-07

+

2023-06-19

Source: vignettes/BioMart_Examples.Rmd @@ -163,12 +163,12 @@

Step 1

Now, Drerio.PhyloMap stores the Phylostratigraphic Map of D. rerio which is used as background set to perform enrichment analyses with -PlotEnrichment() from myTAI.

+PlotEnrichment() from myTAI.

Enrichment Analyses

-

Now, the PlotEnrichment() function visualizes the over- +

Now, the PlotEnrichment() function visualizes the over- and underrepresented Phylostrata of brain specific genes when compared with the total number of genes stored in the Phylostratigraphic Map of D. rerio.

@@ -182,7 +182,7 @@

Enrichment AnalysesDrerio.Brain.Genes <- unlist(unique(na.omit(Drerio.OrganSpecificExpression[ , "brain"]))) # visualize enriched Phylostrata of genes annotated as brain specific -PlotEnrichment(Drerio.PhyloMap, +PlotEnrichment(Drerio.PhyloMap, test.set = Drerio.Brain.Genes, measure = "foldchange", use.only.map = TRUE, @@ -190,12 +190,12 @@

Enrichment AnalysesSelectGeneSet() function from myTAI. Please +notice that SelectGeneSet() can only be used with phylostratigraphic maps only (use.map.only = TRUE argument) since myTAI version > 0.3.0.

-BrainGenes <- SelectGeneSet(ExpressionSet = Drerio.PhyloMap,
+BrainGenes <- SelectGeneSet(ExpressionSet = Drerio.PhyloMap,
                             gene.set      = Drerio.Brain.Genes,
                             use.only.map  = TRUE)
 
diff --git a/docs/articles/Database_Retrieval.html b/docs/articles/Database_Retrieval.html
index 69d70e1..58f5762 100644
--- a/docs/articles/Database_Retrieval.html
+++ b/docs/articles/Database_Retrieval.html
@@ -33,7 +33,7 @@
       
       
         biomartr
-        1.0.3
+        1.0.4
@@ -92,7 +92,7 @@

NCBI Database Retrieval

-

2023-05-07

+

2023-06-19

Source: vignettes/Database_Retrieval.Rmd diff --git a/docs/articles/Functional_Annotation.html b/docs/articles/Functional_Annotation.html index 745b4d8..ee42885 100644 --- a/docs/articles/Functional_Annotation.html +++ b/docs/articles/Functional_Annotation.html @@ -33,7 +33,7 @@ biomartr - 1.0.3 + 1.0.4
@@ -92,7 +92,7 @@

Functional Annotation with biomartr

-

2023-05-07

+

2023-06-19

Source: vignettes/Functional_Annotation.Rmd diff --git a/docs/articles/MetaGenome_Retrieval.html b/docs/articles/MetaGenome_Retrieval.html index e29d559..f78a3e6 100644 --- a/docs/articles/MetaGenome_Retrieval.html +++ b/docs/articles/MetaGenome_Retrieval.html @@ -33,7 +33,7 @@ biomartr - 1.0.3 + 1.0.4
@@ -92,7 +92,7 @@

Meta-Genome Retrieval

-

2023-05-07

+

2023-06-19

Source: vignettes/MetaGenome_Retrieval.Rmd diff --git a/docs/articles/Sequence_Retrieval.html b/docs/articles/Sequence_Retrieval.html index db6e3ba..c93d6df 100644 --- a/docs/articles/Sequence_Retrieval.html +++ b/docs/articles/Sequence_Retrieval.html @@ -33,7 +33,7 @@ biomartr - 1.0.3 + 1.0.4
@@ -92,7 +92,7 @@

Sequence Retrieval

-

2023-05-07

+

2023-06-19

Source: vignettes/Sequence_Retrieval.Rmd @@ -396,10 +396,10 @@

A small negative example
 # check genome availability for Candida glabrata
 is.genome.available(db = "refseq", organism = "Candida glabrata")

-
Unfortunatey, no entry for 'Candida glabrata' was found in the 'refseq' database. 
-Please consider specifying 'db = genbank' or 'db = ensembl' 
-to check whether 'Candida glabrata' is availabe in these databases.
-[1] FALSE
+
Unfortunatey, no entry for 'Candida glabrata' was found in the 'refseq' database. 
+Please consider specifying 'db = genbank' or 'db = ensembl' 
+to check whether 'Candida glabrata' is availabe in these databases.
+[1] FALSE

When now checking the availability in NCBI Genbank we find that indeed ‘Candida glabrata’ is available:

diff --git a/docs/articles/index.html b/docs/articles/index.html
index e0fb79b..50fc846 100644
--- a/docs/articles/index.html
+++ b/docs/articles/index.html
@@ -17,7 +17,7 @@
       
       
         biomartr
-        1.0.3
+        1.0.4
diff --git a/docs/authors.html b/docs/authors.html index 49669a2..ec985b3 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ biomartr - 1.0.3 + 1.0.4

diff --git a/docs/index.html b/docs/index.html index a2b991c..6605262 100644 --- a/docs/index.html +++ b/docs/index.html @@ -40,7 +40,7 @@ biomartr - 1.0.3 + 1.0.4 @@ -174,7 +174,7 @@

InstallationBiocManager::install("biomaRt")

Now users can install biomartr from CRAN:

-# install biomartr 1.0.3
+# install biomartr 1.0.4
 install.packages("biomartr", dependencies = TRUE)
diff --git a/docs/news/index.html b/docs/news/index.html index ce11011..2cecf8a 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ biomartr - 1.0.3 + 1.0.4
@@ -70,7 +70,18 @@

Changelog

-

biomartr 1.0.3

+

biomartr 1.0.4

+
+

New Features

+
  • in getSummaryFile() all columns of the assembly_summary.txt are now specified with names and correct data types (#92)
    • +
+
+

Bug Fixes

+
  • whenever the low-level function getKingdomAssemblySummary() was called by all get*() functions, due to an error in the assembly_summary.txt file for viruses where the total gene count was stored as character and not as integer (as is the case for all other assembly_summary.txt files), an error occurred stating that dplyr::bind_rows() cannot join column $X35 due to differences in data types. This has now been resolved by parsing the correct data types with readr. Many thanks to … for pointing this out to me. (#92)
    • +
+
+
+

biomartr 1.0.32023-05-07

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 943d47a..3466c51 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -1,4 +1,4 @@ -pandoc: 2.19.2 +pandoc: 3.1.1 pkgdown: 2.0.7 pkgdown_sha: ~ articles: @@ -7,5 +7,5 @@ articles: Functional_Annotation: Functional_Annotation.html MetaGenome_Retrieval: MetaGenome_Retrieval.html Sequence_Retrieval: Sequence_Retrieval.html -last_built: 2023-05-07T14:13Z +last_built: 2023-06-19T17:24Z diff --git a/docs/reference/biomart.html b/docs/reference/biomart.html index 297b818..ae8e09c 100644 --- a/docs/reference/biomart.html +++ b/docs/reference/biomart.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4
diff --git a/docs/reference/biomartr-package.html b/docs/reference/biomartr-package.html index 8cd7843..24cafae 100644 --- a/docs/reference/biomartr-package.html +++ b/docs/reference/biomartr-package.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/check_annotation_biomartr.html b/docs/reference/check_annotation_biomartr.html index f66e068..5d10206 100644 --- a/docs/reference/check_annotation_biomartr.html +++ b/docs/reference/check_annotation_biomartr.html @@ -21,7 +21,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/clean.retrieval.html b/docs/reference/clean.retrieval.html index 81cbf85..26a4d36 100644 --- a/docs/reference/clean.retrieval.html +++ b/docs/reference/clean.retrieval.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/download.database.all.html b/docs/reference/download.database.all.html index b4c956e..ed2b7df 100644 --- a/docs/reference/download.database.all.html +++ b/docs/reference/download.database.all.html @@ -20,7 +20,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/download.database.html b/docs/reference/download.database.html index c1e1a25..dcf3894 100644 --- a/docs/reference/download.database.html +++ b/docs/reference/download.database.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getAssemblyStats.html b/docs/reference/getAssemblyStats.html index d36d8ed..d7919fd 100644 --- a/docs/reference/getAssemblyStats.html +++ b/docs/reference/getAssemblyStats.html @@ -21,7 +21,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getAttributes.html b/docs/reference/getAttributes.html index ce2f599..3a93864 100644 --- a/docs/reference/getAttributes.html +++ b/docs/reference/getAttributes.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getCDS.html b/docs/reference/getCDS.html index e5be9ca..68ec649 100644 --- a/docs/reference/getCDS.html +++ b/docs/reference/getCDS.html @@ -22,7 +22,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getCDSSet.html b/docs/reference/getCDSSet.html index 589ca30..778f275 100644 --- a/docs/reference/getCDSSet.html +++ b/docs/reference/getCDSSet.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getCollection.html b/docs/reference/getCollection.html index 0847f58..778d014 100644 --- a/docs/reference/getCollection.html +++ b/docs/reference/getCollection.html @@ -22,7 +22,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getCollectionSet.html b/docs/reference/getCollectionSet.html index f3f4598..cc1236c 100644 --- a/docs/reference/getCollectionSet.html +++ b/docs/reference/getCollectionSet.html @@ -22,7 +22,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getDatasets.html b/docs/reference/getDatasets.html index e8f21e8..8a4349c 100644 --- a/docs/reference/getDatasets.html +++ b/docs/reference/getDatasets.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getENSEMBL.Seq.html b/docs/reference/getENSEMBL.Seq.html index 4dac09f..67bf69b 100644 --- a/docs/reference/getENSEMBL.Seq.html +++ b/docs/reference/getENSEMBL.Seq.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getENSEMBL.gtf.html b/docs/reference/getENSEMBL.gtf.html index 1b4fc40..2fac070 100644 --- a/docs/reference/getENSEMBL.gtf.html +++ b/docs/reference/getENSEMBL.gtf.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getENSEMBLGENOMESInfo.html b/docs/reference/getENSEMBLGENOMESInfo.html index 6707764..492dbda 100644 --- a/docs/reference/getENSEMBLGENOMESInfo.html +++ b/docs/reference/getENSEMBLGENOMESInfo.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getENSEMBLInfo.html b/docs/reference/getENSEMBLInfo.html index 9b5dd4b..e7e9001 100644 --- a/docs/reference/getENSEMBLInfo.html +++ b/docs/reference/getENSEMBLInfo.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getFilters.html b/docs/reference/getFilters.html index 5a8d637..dc87bca 100644 --- a/docs/reference/getFilters.html +++ b/docs/reference/getFilters.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getGENOMEREPORT.html b/docs/reference/getGENOMEREPORT.html index 56702b8..a4c5dee 100644 --- a/docs/reference/getGENOMEREPORT.html +++ b/docs/reference/getGENOMEREPORT.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getGFF.html b/docs/reference/getGFF.html index 496b2be..f11b8bf 100644 --- a/docs/reference/getGFF.html +++ b/docs/reference/getGFF.html @@ -21,7 +21,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getGFFSet.html b/docs/reference/getGFFSet.html index 52fc098..2687b50 100644 --- a/docs/reference/getGFFSet.html +++ b/docs/reference/getGFFSet.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getGO.html b/docs/reference/getGO.html index 9ba20c0..974b494 100644 --- a/docs/reference/getGO.html +++ b/docs/reference/getGO.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getGTF.html b/docs/reference/getGTF.html index 4401df2..1fd7ebc 100644 --- a/docs/reference/getGTF.html +++ b/docs/reference/getGTF.html @@ -21,7 +21,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getGenome.html b/docs/reference/getGenome.html index bd7e24d..937c322 100644 --- a/docs/reference/getGenome.html +++ b/docs/reference/getGenome.html @@ -24,7 +24,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getGenomeSet.html b/docs/reference/getGenomeSet.html index 03a3695..7d23f98 100644 --- a/docs/reference/getGenomeSet.html +++ b/docs/reference/getGenomeSet.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getGroups.html b/docs/reference/getGroups.html index de8b21b..1af3c1d 100644 --- a/docs/reference/getGroups.html +++ b/docs/reference/getGroups.html @@ -17,7 +17,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getKingdomAssemblySummary.html b/docs/reference/getKingdomAssemblySummary.html index e478ef9..32833a1 100644 --- a/docs/reference/getKingdomAssemblySummary.html +++ b/docs/reference/getKingdomAssemblySummary.html @@ -21,7 +21,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getKingdoms.html b/docs/reference/getKingdoms.html index ca4cee2..cbbd15e 100644 --- a/docs/reference/getKingdoms.html +++ b/docs/reference/getKingdoms.html @@ -17,7 +17,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getMarts.html b/docs/reference/getMarts.html index a2031ee..6d1910e 100644 --- a/docs/reference/getMarts.html +++ b/docs/reference/getMarts.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getMetaGenomeAnnotations.html b/docs/reference/getMetaGenomeAnnotations.html index 8049b8c..f70b2e4 100644 --- a/docs/reference/getMetaGenomeAnnotations.html +++ b/docs/reference/getMetaGenomeAnnotations.html @@ -21,7 +21,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getMetaGenomeSummary.html b/docs/reference/getMetaGenomeSummary.html index 73c53fe..0248424 100644 --- a/docs/reference/getMetaGenomeSummary.html +++ b/docs/reference/getMetaGenomeSummary.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getMetaGenomes.html b/docs/reference/getMetaGenomes.html index 3612dea..674aa7c 100644 --- a/docs/reference/getMetaGenomes.html +++ b/docs/reference/getMetaGenomes.html @@ -20,7 +20,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getProteome.html b/docs/reference/getProteome.html index 8ac0ba7..cf9bbc5 100644 --- a/docs/reference/getProteome.html +++ b/docs/reference/getProteome.html @@ -21,7 +21,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getProteomeSet.html b/docs/reference/getProteomeSet.html index f33560d..329edbb 100644 --- a/docs/reference/getProteomeSet.html +++ b/docs/reference/getProteomeSet.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getRNA.html b/docs/reference/getRNA.html index 9297859..7dca444 100644 --- a/docs/reference/getRNA.html +++ b/docs/reference/getRNA.html @@ -21,7 +21,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getRNASet.html b/docs/reference/getRNASet.html index 305eff6..9d7447b 100644 --- a/docs/reference/getRNASet.html +++ b/docs/reference/getRNASet.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getReleases.html b/docs/reference/getReleases.html index f6a8d6d..c6490f2 100644 --- a/docs/reference/getReleases.html +++ b/docs/reference/getReleases.html @@ -20,7 +20,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getRepeatMasker.html b/docs/reference/getRepeatMasker.html index 1f5e7d3..5bb6467 100644 --- a/docs/reference/getRepeatMasker.html +++ b/docs/reference/getRepeatMasker.html @@ -22,7 +22,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/getSummaryFile.html b/docs/reference/getSummaryFile.html index 7aa906c..34b1120 100644 --- a/docs/reference/getSummaryFile.html +++ b/docs/reference/getSummaryFile.html @@ -17,7 +17,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/index.html b/docs/reference/index.html index 9afad3e..57e9560 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/is.genome.available.html b/docs/reference/is.genome.available.html index 020d0e6..a7cffcf 100644 --- a/docs/reference/is.genome.available.html +++ b/docs/reference/is.genome.available.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/listDatabases.html b/docs/reference/listDatabases.html index b5244cf..5afbdd3 100644 --- a/docs/reference/listDatabases.html +++ b/docs/reference/listDatabases.html @@ -24,7 +24,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/listGenomes.html b/docs/reference/listGenomes.html index dfd20bd..33c06a8 100644 --- a/docs/reference/listGenomes.html +++ b/docs/reference/listGenomes.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/listGroups.html b/docs/reference/listGroups.html index 9fdaab2..54c2ea1 100644 --- a/docs/reference/listGroups.html +++ b/docs/reference/listGroups.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/listKingdoms.html b/docs/reference/listKingdoms.html index e593a05..3a58179 100644 --- a/docs/reference/listKingdoms.html +++ b/docs/reference/listKingdoms.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/listMetaGenomes.html b/docs/reference/listMetaGenomes.html index dc4aa99..41c58be 100644 --- a/docs/reference/listMetaGenomes.html +++ b/docs/reference/listMetaGenomes.html @@ -20,7 +20,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/meta.retrieval.all.html b/docs/reference/meta.retrieval.all.html index 8233241..e73d7ac 100644 --- a/docs/reference/meta.retrieval.all.html +++ b/docs/reference/meta.retrieval.all.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/meta.retrieval.html b/docs/reference/meta.retrieval.html index 7fb5c7c..000b7ed 100644 --- a/docs/reference/meta.retrieval.html +++ b/docs/reference/meta.retrieval.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/organismAttributes.html b/docs/reference/organismAttributes.html index 7fe27b9..e6c5573 100644 --- a/docs/reference/organismAttributes.html +++ b/docs/reference/organismAttributes.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/organismBM.html b/docs/reference/organismBM.html index be35aec..926cb58 100644 --- a/docs/reference/organismBM.html +++ b/docs/reference/organismBM.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/organismFilters.html b/docs/reference/organismFilters.html index f701056..72912b0 100644 --- a/docs/reference/organismFilters.html +++ b/docs/reference/organismFilters.html @@ -20,7 +20,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/read_assemblystats.html b/docs/reference/read_assemblystats.html index 90fc89f..d5ec425 100644 --- a/docs/reference/read_assemblystats.html +++ b/docs/reference/read_assemblystats.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/read_cds.html b/docs/reference/read_cds.html index bae11c4..50b6afc 100644 --- a/docs/reference/read_cds.html +++ b/docs/reference/read_cds.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/read_genome.html b/docs/reference/read_genome.html index 09e87fe..ce1eb5c 100644 --- a/docs/reference/read_genome.html +++ b/docs/reference/read_genome.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/read_gff.html b/docs/reference/read_gff.html index cd9e7f2..0636f04 100644 --- a/docs/reference/read_gff.html +++ b/docs/reference/read_gff.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/read_proteome.html b/docs/reference/read_proteome.html index 9902c2c..a9f6321 100644 --- a/docs/reference/read_proteome.html +++ b/docs/reference/read_proteome.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/read_rm.html b/docs/reference/read_rm.html index 046ad45..b683cad 100644 --- a/docs/reference/read_rm.html +++ b/docs/reference/read_rm.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/read_rna.html b/docs/reference/read_rna.html index f8440b7..b270fc3 100644 --- a/docs/reference/read_rna.html +++ b/docs/reference/read_rna.html @@ -18,7 +18,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/refseqOrganisms.html b/docs/reference/refseqOrganisms.html index 80fe7b6..d1258ab 100644 --- a/docs/reference/refseqOrganisms.html +++ b/docs/reference/refseqOrganisms.html @@ -19,7 +19,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/summary_cds.html b/docs/reference/summary_cds.html index 2d73992..67892d3 100644 --- a/docs/reference/summary_cds.html +++ b/docs/reference/summary_cds.html @@ -17,7 +17,7 @@ biomartr - 1.0.3 + 1.0.4 diff --git a/docs/reference/summary_genome.html b/docs/reference/summary_genome.html index f1efce3..67b1fe9 100644 --- a/docs/reference/summary_genome.html +++ b/docs/reference/summary_genome.html @@ -21,7 +21,7 @@ biomartr - 1.0.3 + 1.0.4