From 64226c5889b1e73d83408810574033eb9ac7a945 Mon Sep 17 00:00:00 2001 From: Marco Donadoni Date: Wed, 18 Sep 2024 17:05:26 +0200 Subject: [PATCH] wip remove root --- .github/workflows/ci.yml | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 1f06d83..7921fa8 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -127,14 +127,10 @@ jobs: uses: reanahub/reana-github-actions/local-run@v1 with: commands: | - # Install ROOT - wget https://root.cern/download/root_v6.32.04.Linux-ubuntu24.04-x86_64-gcc13.2.tar.gz - tar -xzvf root_v6.32.04.Linux-ubuntu24.04-x86_64-gcc13.2.tar.gz - source root/bin/thisroot.sh rm -rf snakemake-local-run && mkdir -p snakemake-local-run && cd snakemake-local-run pip install 'pulp<2.8' snakemake cp -a ../code . - snakemake -s ../workflow/snakemake/Snakefile --configfile ../workflow/snakemake/inputs.yaml -p --cores 1 + snakemake --sdm apptainer -s ../workflow/snakemake/Snakefile --configfile ../workflow/snakemake/inputs.yaml -p --cores 1 ls -l `pwd`/results/plot.png cd .. && rm -rf snakemake-local-run