graph-importer/pom.xml at main · reactome/graph-importer · GitHub

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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>org.reactome.server.graph</groupId>
  <artifactId>graph-importer</artifactId>
  <packaging>jar</packaging>
  <version>2.1.0</version>
  <name>GraphImporter</name>
  <description>
        The Graph Importer is a executable jar file to convert data taken form the Reactome MySQL Database to a Neo4j Graph Database.
        For more information visit the reactome github repository.
    </description>
  <organization>
    <name>The European Bioinformatics Institute</name>
    <url>https://www.ebi.ac.uk/</url>
  </organization>
  <parent>
    <groupId>org.reactome.maven</groupId>
    <artifactId>reactome-parent</artifactId>
    <version>1.0.5-SNAPSHOT</version>
  </parent>
  <properties>
    <main.class>org.reactome.server.graph.Main</main.class>
  </properties>
  <dependencies>
    <!--Graph core dependency, needed for accessing the model-->
    <dependency>
      <groupId>org.reactome.server.graph</groupId>
      <artifactId>graph-core</artifactId>
    </dependency>
    <dependency>
      <groupId>org.reactome.server.interactors</groupId>
      <artifactId>interactor-core</artifactId>
    </dependency>
    <!--Reactome-base for MYSQL Adapter-->
    <dependency>
      <groupId>org.reactome.base</groupId>
      <artifactId>reactome-base</artifactId>
      <version>2.2.4-SNAPSHOT</version>
    </dependency>
    <dependency>
      <groupId>org.neo4j</groupId>
      <artifactId>neo4j-batch-insert</artifactId>
    </dependency>
    <!--Jasp console reader-->
    <dependency>
      <groupId>com.martiansoftware</groupId>
      <artifactId>jsap</artifactId>
    </dependency>
    <!--Org json importer-->
    <dependency>
      <groupId>org.json</groupId>
      <artifactId>json</artifactId>
    </dependency>
    <!--Logback classic-->
    <dependency>
      <groupId>ch.qos.logback</groupId>
      <artifactId>logback-classic</artifactId>
    </dependency>
    <!-- Mysql connector -->
    <dependency>
      <groupId>mysql</groupId>
      <artifactId>mysql-connector-java</artifactId>
    </dependency>
  </dependencies>
  <repositories>
    <!--Maven Central repository-->
    <repository>
      <id>mvn-central</id>
      <name>The Maven Central repository</name>
      <url>https://oss.sonatype.org/content/repositories/snapshots/</url>
      <releases>
        <enabled>false</enabled>
      </releases>
      <snapshots>
        <enabled>true</enabled>
      </snapshots>
    </repository>
    <!--EBI repository-->
    <repository>
      <id>nexus-ebi-repo</id>
      <name>The EBI internal repository</name>
      <url>https://www.ebi.ac.uk/Tools/maven/repos/content/groups/ebi-repo/</url>
      <releases>
        <enabled>true</enabled>
      </releases>
      <snapshots>
        <enabled>false</enabled>
      </snapshots>
    </repository>
    <!-- EBI SNAPSHOT repository -->
    <repository>
      <id>nexus-ebi-snapshot-repo</id>
      <name>The EBI internal snapshot repository</name>
      <url>https://www.ebi.ac.uk/Tools/maven/repos/content/groups/ebi-snapshots/</url>
      <releases>
        <enabled>false</enabled>
      </releases>
      <snapshots>
        <enabled>true</enabled>
      </snapshots>
    </repository>
  </repositories>
  <build>
    <finalName>${project.name}</finalName>
    <resources>
      <resource>
        <directory>src/main/resources</directory>
        <filtering>true</filtering>
      </resource>
    </resources>
    <plugins>
      <plugin>
        <groupId>org.springframework.boot</groupId>
        <artifactId>spring-boot-maven-plugin</artifactId>
        <version>${spring-boot.version}</version>
        <configuration>
          <fork>true</fork>
          <mainClass>${main.class}</mainClass>
          <classifier>exec</classifier>
        </configuration>
        <executions>
          <execution>
            <goals>
              <goal>repackage</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-compiler-plugin</artifactId>
        <version>3.13.0</version>
        <configuration>
          <source>11</source>
          <target>11</target>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-checkstyle-plugin</artifactId>
        <version>3.1.1</version>
        <dependencies>
          <!-- This dependency allows Checkstyle to understand Java 11 syntax -->
          <dependency>
            <groupId>com.puppycrawl.tools</groupId>
            <artifactId>checkstyle</artifactId>
            <version>8.44</version>
          </dependency>
        </dependencies>
        <executions>
          <execution>
            <id>checkstyle-check</id>
            <goals>
              <goal>check</goal>
            </goals>
          </execution>
        </executions>
        <configuration>
          <configLocation>checkstyle.xml</configLocation>
          <!-- Optional: Set encoding -->
          <encoding>UTF-8</encoding>
        </configuration>
      </plugin>
    </plugins>
  </build>
</project>