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Color and identifier support will allow third-party tools (like Newt, newteditor.org) to modify the figures for alternative uses and pairing with analyses.
Color and identifier support will allow third-party tools (like Newt, newteditor.org) to modify the figures for alternative uses and pairing with analyses.
Example file with color and identifiers
https://bitbucket.org/vtoure/sbgn-extension/src/master/SBGNextension/examples/glycolysis.sbgn
Colors
SBGNML color information is stored as SBML Render content:
http://otto.bioquant.uni-heidelberg.de/sbml/#specifications
Identifiers
SBGNML identifier information is stored as SBML annotations:
https://semanticsbml.org/semanticSBML/static/documentation/annotate.html
libSBGN Support
Support for identifiers is provided in the Java libSBGN library (functions by @fbergmann).
that way adding new entries becomes relatively easy:
and retrieving them is simple enough:
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