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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export("%>%")
export(apply_eln2015_cyto)
export(apply_eln2017_cyto)
export(apply_eln2017_rna)
export(apply_expression_signature_reclassification)
export(aps_volcano_plot)
export(calculate_reference_set_coefficient_of_variation)
export(calculate_reference_set_mean_expression)
export(connect_to_aml_project_orm)
export(construct_rna_qc_dataframe)
export(construct_sailfish_gene_dataframe)
export(convert_sailfish_df_to_matrix)
export(density_plotter)
export(downregulated_genes)
export(eng_log_breaks)
export(expression_matrix_to_long_df)
export(expression_summary)
export(fit_coxph)
export(gather_expression_matrix_to_tidy_df)
export(get_cluster_assignments_for_k)
export(ggsave_pdf_and_png)
export(grid_arrange_shared_legend)
export(group_tally_table)
export(hit_plotter)
export(limma_logFC_to_signed_foldchange)
export(log2_plus1_transform)
export(long_df_to_ranked_matrix)
export(matrix_glimpse)
export(munge_voom_to_ipa)
export(nest_libraries_by_patient)
export(num_to_text)
export(parse_pavfinder_0.2.0)
export(parse_pavfinder_0.3.0)
export(pathway_enrichment_plot)
export(plot_heatmap_for_k)
export(plot_rf_predictions)
export(plot_survival)
export(plot_vars_by_coverage)
export(plot_vars_by_vaf)
export(pretty_kable)
export(pretty_num)
export(pull_enrichr_enriched_terms)
export(pull_enrichr_terms_to_plot)
export(random_forest_summary)
export(read_filled_variant_tsv)
export(rescale_genes_by_reference)
export(retrieve_db_comments)
export(retrieve_db_curated_results)
export(retrieve_db_libraries)
export(retrieve_db_paths)
export(retrieve_db_specimens)
export(rf_predictions)
export(rna_seqc_parser)
export(run_cna_workflow)
export(run_gage_for_feature)
export(run_voom_for_feature)
export(sailfish_gene_parser_post_0.7.0)
export(sailfish_isoform_parser_post_0.7.0)
export(sailfish_isoform_parser_pre_0.7.0)
export(scale_by_rolling_mean)
export(select_by_position)
export(split_gatk_format_vals)
export(spread_expression_df_to_matrix)
export(spread_filled_snv_df_to_wide)
export(subset_genes_by_thresholds)
export(subset_genes_for_plots)
export(subset_heatmap)
export(subset_pc_plot)
export(subtype_to_disease)
export(tfl_split_sort)
export(train_caret_rf)
export(upregulated_genes)
export(volcano_plotter)
importFrom(ggplot2,aes)
importFrom(magrittr,"%>%")
importFrom(rlang,.data)