-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathchanges.txt
116 lines (79 loc) · 2.42 KB
/
changes.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
January 2025
trying to fix pipeline from getting hung up
December 2024
adding import for EVA ss Ids for the variants Monika sent
3/8/2023
rgd-web method to get genic status because it is correct
12/15/2023
improved error logging
12/12/2023
starting load for release 5
10/31/2023
upgraded build.gradle to java17
09/27/2023
upgraded build.gradle
11/28/2022
adding new EVA Release 4
8/29/2022
updated script for Variant run for current release of EVA
8/16/2022
reverted delete batch to be like before, not in new file remove it
updating logger for variant import
7/18/2022
EvaImport will only load into EVA table and remove multi-mapped variants
VariantImport will insert eva variants into variant tables
7/8/2022
removing objects that are mapped to multiple positions
6/22/2022
load remaining EVA species for release 2 and 3
6/17/2022
loading release 3 for rat
6/10/2022
adding current and past release (1 and 2)
4/25/2022
fixed logging of dates
2/10/2022
updating variants in CN tables to have EVA rs ids and/or adding new variant for it
2/7/2022
making download links up to date
1/31/2022
updated log4j to avoid zero day exploit
10/1
Updated so there is an import class and later to be added an export class
created a new script for import Eva data
7/18 - 7/20
getting Eva's SO number to include SO:
6/19/2020
added a total for deleted and inserted
3/2020 - 4/15/2020
Added a function to get eva data through their API
2/24/2020
removes leading zero from chromosomes that have one
2/14/2020
added pig, dog, and green monkey assembly to be added to database
2/13/2020
changed EvaDAO insert without the additional check
2/7 - 2/11
moved some blocks of code around for readability.
added a new getEvaObjects using mapkey and chromosome in EvaDAO
Changed the extractData to go every chromosome instead of the whole file at once
2/4/2020
added mouse assembly, GRCm38
1/31/2020
added new lines and the assembly to the logs
1/30/2020
made changes to use gradle and more rgd-core libraries
1/29/2020
added Eva, EvaDAO, EvaQuery to rgd-core
1/27/2020
finished implementing EvaDAO and EvaQuery classes to work with the main code
1/24/2020
Added EvaDAO and EvaQuery classes with more Spring framework adjustments
1/20/2020
Started the conversion with properties files
1/13 - 1/16
worked on incremental updates to the database
1/5 - 1/10
Worked on Set operators: minus, intersection, somewhat union
1/3/2020
connected to database and loading data to db