From 3a69e17c5e8510172696727217a18c87b513dd1e Mon Sep 17 00:00:00 2001 From: aleksanderbl29 <73799306+aleksanderbl29@users.noreply.github.com> Date: Mon, 28 Oct 2024 08:32:43 +0100 Subject: [PATCH] Package setup --- .Rbuildignore | 3 + .github/.gitignore | 1 + .github/workflows/R-CMD-check.yaml | 52 +++ .github/workflows/test-coverage.yaml | 61 +++ DESCRIPTION | 3 +- LICENSE.md | 595 +++++++++++++++++++++++++++ NAMESPACE | 3 +- R/hello.R | 18 - README.Rmd | 57 +++ README.md | 56 +++ geodk.Rproj | 3 + man/figures/README-pressure-1.png | Bin 0 -> 22985 bytes tests/testthat.R | 12 + 13 files changed, 844 insertions(+), 20 deletions(-) create mode 100644 .github/.gitignore create mode 100644 .github/workflows/R-CMD-check.yaml create mode 100644 .github/workflows/test-coverage.yaml create mode 100644 LICENSE.md delete mode 100644 R/hello.R create mode 100644 README.Rmd create mode 100644 README.md create mode 100644 man/figures/README-pressure-1.png create mode 100644 tests/testthat.R diff --git a/.Rbuildignore b/.Rbuildignore index d821302..a5f38f9 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -2,3 +2,6 @@ ^renv\.lock$ ^.*\.Rproj$ ^\.Rproj\.user$ +^LICENSE\.md$ +^\.github$ +^README\.Rmd$ diff --git a/.github/.gitignore b/.github/.gitignore new file mode 100644 index 0000000..2d19fc7 --- /dev/null +++ b/.github/.gitignore @@ -0,0 +1 @@ +*.html diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml new file mode 100644 index 0000000..d46a617 --- /dev/null +++ b/.github/workflows/R-CMD-check.yaml @@ -0,0 +1,52 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + branches: [main, master] + +name: R-CMD-check.yaml + +permissions: read-all + +jobs: + R-CMD-check: + runs-on: ${{ matrix.config.os }} + + name: ${{ matrix.config.os }} (${{ matrix.config.r }}) + + strategy: + fail-fast: false + matrix: + config: + - {os: macos-latest, r: 'release'} + - {os: windows-latest, r: 'release'} + - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} + - {os: ubuntu-latest, r: 'release'} + - {os: ubuntu-latest, r: 'oldrel-1'} + + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + R_KEEP_PKG_SOURCE: yes + + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/setup-pandoc@v2 + + - uses: r-lib/actions/setup-r@v2 + with: + r-version: ${{ matrix.config.r }} + http-user-agent: ${{ matrix.config.http-user-agent }} + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::rcmdcheck + needs: check + + - uses: r-lib/actions/check-r-package@v2 + with: + upload-snapshots: true + build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")' diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml new file mode 100644 index 0000000..9882260 --- /dev/null +++ b/.github/workflows/test-coverage.yaml @@ -0,0 +1,61 @@ +# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples +# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help +on: + push: + branches: [main, master] + pull_request: + branches: [main, master] + +name: test-coverage.yaml + +permissions: read-all + +jobs: + test-coverage: + runs-on: ubuntu-latest + env: + GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} + + steps: + - uses: actions/checkout@v4 + + - uses: r-lib/actions/setup-r@v2 + with: + use-public-rspm: true + + - uses: r-lib/actions/setup-r-dependencies@v2 + with: + extra-packages: any::covr, any::xml2 + needs: coverage + + - name: Test coverage + run: | + cov <- covr::package_coverage( + quiet = FALSE, + clean = FALSE, + install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package") + ) + covr::to_cobertura(cov) + shell: Rscript {0} + + - uses: codecov/codecov-action@v4 + with: + fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }} + file: ./cobertura.xml + plugin: noop + disable_search: true + token: ${{ secrets.CODECOV_TOKEN }} + + - name: Show testthat output + if: always() + run: | + ## -------------------------------------------------------------------- + find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true + shell: bash + + - name: Upload test results + if: failure() + uses: actions/upload-artifact@v4 + with: + name: coverage-test-failures + path: ${{ runner.temp }}/package diff --git a/DESCRIPTION b/DESCRIPTION index a0ecb33..812a3bb 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -8,7 +8,8 @@ Authors@R: comment = c(ORCID = "0009-0007-7984-4650")) Maintainer: Aleksander Bang-Larsen Description: This package provides access to all geospatial data provided by - the danish agency called Klimadatastyrelsen. Under the hood it wraps + the danish agency called Klimadatastyrelsen. Under the hood it wraps the + `{dawaR}` and `{dkdata}` packages which provide access to the agency APIs. License: GPL (>= 3) Encoding: UTF-8 LazyData: true diff --git a/LICENSE.md b/LICENSE.md new file mode 100644 index 0000000..175443c --- /dev/null +++ b/LICENSE.md @@ -0,0 +1,595 @@ +GNU General Public License +========================== + +_Version 3, 29 June 2007_ +_Copyright © 2007 Free Software Foundation, Inc. <>_ + +Everyone is permitted to copy and distribute verbatim copies of this license +document, but changing it is not allowed. + +## Preamble + +The GNU General Public License is a free, copyleft license for software and other +kinds of works. + +The licenses for most software and other practical works are designed to take away +your freedom to share and change the works. By contrast, the GNU General Public +License is intended to guarantee your freedom to share and change all versions of a +program--to make sure it remains free software for all its users. We, the Free +Software Foundation, use the GNU General Public License for most of our software; it +applies also to any other work released this way by its authors. You can apply it to +your programs, too. + +When we speak of free software, we are referring to freedom, not price. Our General +Public Licenses are designed to make sure that you have the freedom to distribute +copies of free software (and charge for them if you wish), that you receive source +code or can get it if you want it, that you can change the software or use pieces of +it in new free programs, and that you know you can do these things. + +To protect your rights, we need to prevent others from denying you these rights or +asking you to surrender the rights. Therefore, you have certain responsibilities if +you distribute copies of the software, or if you modify it: responsibilities to +respect the freedom of others. + +For example, if you distribute copies of such a program, whether gratis or for a fee, +you must pass on to the recipients the same freedoms that you received. You must make +sure that they, too, receive or can get the source code. And you must show them these +terms so they know their rights. + +Developers that use the GNU GPL protect your rights with two steps: **(1)** assert +copyright on the software, and **(2)** offer you this License giving you legal permission +to copy, distribute and/or modify it. + +For the developers' and authors' protection, the GPL clearly explains that there is +no warranty for this free software. For both users' and authors' sake, the GPL +requires that modified versions be marked as changed, so that their problems will not +be attributed erroneously to authors of previous versions. + +Some devices are designed to deny users access to install or run modified versions of +the software inside them, although the manufacturer can do so. This is fundamentally +incompatible with the aim of protecting users' freedom to change the software. The +systematic pattern of such abuse occurs in the area of products for individuals to +use, which is precisely where it is most unacceptable. Therefore, we have designed +this version of the GPL to prohibit the practice for those products. If such problems +arise substantially in other domains, we stand ready to extend this provision to +those domains in future versions of the GPL, as needed to protect the freedom of +users. + +Finally, every program is threatened constantly by software patents. States should +not allow patents to restrict development and use of software on general-purpose +computers, but in those that do, we wish to avoid the special danger that patents +applied to a free program could make it effectively proprietary. To prevent this, the +GPL assures that patents cannot be used to render the program non-free. + +The precise terms and conditions for copying, distribution and modification follow. + +## TERMS AND CONDITIONS + +### 0. Definitions + +“This License” refers to version 3 of the GNU General Public License. + +“Copyright” also means copyright-like laws that apply to other kinds of +works, such as semiconductor masks. + +“The Program” refers to any copyrightable work licensed under this +License. Each licensee is addressed as “you”. “Licensees” and +“recipients” may be individuals or organizations. + +To “modify” a work means to copy from or adapt all or part of the work in +a fashion requiring copyright permission, other than the making of an exact copy. The +resulting work is called a “modified version” of the earlier work or a +work “based on” the earlier work. + +A “covered work” means either the unmodified Program or a work based on +the Program. + +To “propagate” a work means to do anything with it that, without +permission, would make you directly or secondarily liable for infringement under +applicable copyright law, except executing it on a computer or modifying a private +copy. Propagation includes copying, distribution (with or without modification), +making available to the public, and in some countries other activities as well. + +To “convey” a work means any kind of propagation that enables other +parties to make or receive copies. Mere interaction with a user through a computer +network, with no transfer of a copy, is not conveying. + +An interactive user interface displays “Appropriate Legal Notices” to the +extent that it includes a convenient and prominently visible feature that **(1)** +displays an appropriate copyright notice, and **(2)** tells the user that there is no +warranty for the work (except to the extent that warranties are provided), that +licensees may convey the work under this License, and how to view a copy of this +License. If the interface presents a list of user commands or options, such as a +menu, a prominent item in the list meets this criterion. + +### 1. Source Code + +The “source code” for a work means the preferred form of the work for +making modifications to it. “Object code” means any non-source form of a +work. + +A “Standard Interface” means an interface that either is an official +standard defined by a recognized standards body, or, in the case of interfaces +specified for a particular programming language, one that is widely used among +developers working in that language. + +The “System Libraries” of an executable work include anything, other than +the work as a whole, that **(a)** is included in the normal form of packaging a Major +Component, but which is not part of that Major Component, and **(b)** serves only to +enable use of the work with that Major Component, or to implement a Standard +Interface for which an implementation is available to the public in source code form. +A “Major Component”, in this context, means a major essential component +(kernel, window system, and so on) of the specific operating system (if any) on which +the executable work runs, or a compiler used to produce the work, or an object code +interpreter used to run it. + +The “Corresponding Source” for a work in object code form means all the +source code needed to generate, install, and (for an executable work) run the object +code and to modify the work, including scripts to control those activities. However, +it does not include the work's System Libraries, or general-purpose tools or +generally available free programs which are used unmodified in performing those +activities but which are not part of the work. For example, Corresponding Source +includes interface definition files associated with source files for the work, and +the source code for shared libraries and dynamically linked subprograms that the work +is specifically designed to require, such as by intimate data communication or +control flow between those subprograms and other parts of the work. + +The Corresponding Source need not include anything that users can regenerate +automatically from other parts of the Corresponding Source. + +The Corresponding Source for a work in source code form is that same work. + +### 2. Basic Permissions + +All rights granted under this License are granted for the term of copyright on the +Program, and are irrevocable provided the stated conditions are met. This License +explicitly affirms your unlimited permission to run the unmodified Program. The +output from running a covered work is covered by this License only if the output, +given its content, constitutes a covered work. This License acknowledges your rights +of fair use or other equivalent, as provided by copyright law. + +You may make, run and propagate covered works that you do not convey, without +conditions so long as your license otherwise remains in force. You may convey covered +works to others for the sole purpose of having them make modifications exclusively +for you, or provide you with facilities for running those works, provided that you +comply with the terms of this License in conveying all material for which you do not +control copyright. Those thus making or running the covered works for you must do so +exclusively on your behalf, under your direction and control, on terms that prohibit +them from making any copies of your copyrighted material outside their relationship +with you. + +Conveying under any other circumstances is permitted solely under the conditions +stated below. Sublicensing is not allowed; section 10 makes it unnecessary. + +### 3. Protecting Users' Legal Rights From Anti-Circumvention Law + +No covered work shall be deemed part of an effective technological measure under any +applicable law fulfilling obligations under article 11 of the WIPO copyright treaty +adopted on 20 December 1996, or similar laws prohibiting or restricting circumvention +of such measures. + +When you convey a covered work, you waive any legal power to forbid circumvention of +technological measures to the extent such circumvention is effected by exercising +rights under this License with respect to the covered work, and you disclaim any +intention to limit operation or modification of the work as a means of enforcing, +against the work's users, your or third parties' legal rights to forbid circumvention +of technological measures. + +### 4. Conveying Verbatim Copies + +You may convey verbatim copies of the Program's source code as you receive it, in any +medium, provided that you conspicuously and appropriately publish on each copy an +appropriate copyright notice; keep intact all notices stating that this License and +any non-permissive terms added in accord with section 7 apply to the code; keep +intact all notices of the absence of any warranty; and give all recipients a copy of +this License along with the Program. + +You may charge any price or no price for each copy that you convey, and you may offer +support or warranty protection for a fee. + +### 5. Conveying Modified Source Versions + +You may convey a work based on the Program, or the modifications to produce it from +the Program, in the form of source code under the terms of section 4, provided that +you also meet all of these conditions: + +* **a)** The work must carry prominent notices stating that you modified it, and giving a +relevant date. +* **b)** The work must carry prominent notices stating that it is released under this +License and any conditions added under section 7. This requirement modifies the +requirement in section 4 to “keep intact all notices”. +* **c)** You must license the entire work, as a whole, under this License to anyone who +comes into possession of a copy. This License will therefore apply, along with any +applicable section 7 additional terms, to the whole of the work, and all its parts, +regardless of how they are packaged. This License gives no permission to license the +work in any other way, but it does not invalidate such permission if you have +separately received it. +* **d)** If the work has interactive user interfaces, each must display Appropriate Legal +Notices; however, if the Program has interactive interfaces that do not display +Appropriate Legal Notices, your work need not make them do so. + +A compilation of a covered work with other separate and independent works, which are +not by their nature extensions of the covered work, and which are not combined with +it such as to form a larger program, in or on a volume of a storage or distribution +medium, is called an “aggregate” if the compilation and its resulting +copyright are not used to limit the access or legal rights of the compilation's users +beyond what the individual works permit. Inclusion of a covered work in an aggregate +does not cause this License to apply to the other parts of the aggregate. + +### 6. Conveying Non-Source Forms + +You may convey a covered work in object code form under the terms of sections 4 and +5, provided that you also convey the machine-readable Corresponding Source under the +terms of this License, in one of these ways: + +* **a)** Convey the object code in, or embodied in, a physical product (including a +physical distribution medium), accompanied by the Corresponding Source fixed on a +durable physical medium customarily used for software interchange. +* **b)** Convey the object code in, or embodied in, a physical product (including a +physical distribution medium), accompanied by a written offer, valid for at least +three years and valid for as long as you offer spare parts or customer support for +that product model, to give anyone who possesses the object code either **(1)** a copy of +the Corresponding Source for all the software in the product that is covered by this +License, on a durable physical medium customarily used for software interchange, for +a price no more than your reasonable cost of physically performing this conveying of +source, or **(2)** access to copy the Corresponding Source from a network server at no +charge. +* **c)** Convey individual copies of the object code with a copy of the written offer to +provide the Corresponding Source. This alternative is allowed only occasionally and +noncommercially, and only if you received the object code with such an offer, in +accord with subsection 6b. +* **d)** Convey the object code by offering access from a designated place (gratis or for +a charge), and offer equivalent access to the Corresponding Source in the same way +through the same place at no further charge. You need not require recipients to copy +the Corresponding Source along with the object code. If the place to copy the object +code is a network server, the Corresponding Source may be on a different server +(operated by you or a third party) that supports equivalent copying facilities, +provided you maintain clear directions next to the object code saying where to find +the Corresponding Source. Regardless of what server hosts the Corresponding Source, +you remain obligated to ensure that it is available for as long as needed to satisfy +these requirements. +* **e)** Convey the object code using peer-to-peer transmission, provided you inform +other peers where the object code and Corresponding Source of the work are being +offered to the general public at no charge under subsection 6d. + +A separable portion of the object code, whose source code is excluded from the +Corresponding Source as a System Library, need not be included in conveying the +object code work. + +A “User Product” is either **(1)** a “consumer product”, which +means any tangible personal property which is normally used for personal, family, or +household purposes, or **(2)** anything designed or sold for incorporation into a +dwelling. In determining whether a product is a consumer product, doubtful cases +shall be resolved in favor of coverage. For a particular product received by a +particular user, “normally used” refers to a typical or common use of +that class of product, regardless of the status of the particular user or of the way +in which the particular user actually uses, or expects or is expected to use, the +product. A product is a consumer product regardless of whether the product has +substantial commercial, industrial or non-consumer uses, unless such uses represent +the only significant mode of use of the product. + +“Installation Information” for a User Product means any methods, +procedures, authorization keys, or other information required to install and execute +modified versions of a covered work in that User Product from a modified version of +its Corresponding Source. The information must suffice to ensure that the continued +functioning of the modified object code is in no case prevented or interfered with +solely because modification has been made. + +If you convey an object code work under this section in, or with, or specifically for +use in, a User Product, and the conveying occurs as part of a transaction in which +the right of possession and use of the User Product is transferred to the recipient +in perpetuity or for a fixed term (regardless of how the transaction is +characterized), the Corresponding Source conveyed under this section must be +accompanied by the Installation Information. But this requirement does not apply if +neither you nor any third party retains the ability to install modified object code +on the User Product (for example, the work has been installed in ROM). + +The requirement to provide Installation Information does not include a requirement to +continue to provide support service, warranty, or updates for a work that has been +modified or installed by the recipient, or for the User Product in which it has been +modified or installed. Access to a network may be denied when the modification itself +materially and adversely affects the operation of the network or violates the rules +and protocols for communication across the network. + +Corresponding Source conveyed, and Installation Information provided, in accord with +this section must be in a format that is publicly documented (and with an +implementation available to the public in source code form), and must require no +special password or key for unpacking, reading or copying. + +### 7. Additional Terms + +“Additional permissions” are terms that supplement the terms of this +License by making exceptions from one or more of its conditions. Additional +permissions that are applicable to the entire Program shall be treated as though they +were included in this License, to the extent that they are valid under applicable +law. If additional permissions apply only to part of the Program, that part may be +used separately under those permissions, but the entire Program remains governed by +this License without regard to the additional permissions. + +When you convey a copy of a covered work, you may at your option remove any +additional permissions from that copy, or from any part of it. (Additional +permissions may be written to require their own removal in certain cases when you +modify the work.) You may place additional permissions on material, added by you to a +covered work, for which you have or can give appropriate copyright permission. + +Notwithstanding any other provision of this License, for material you add to a +covered work, you may (if authorized by the copyright holders of that material) +supplement the terms of this License with terms: + +* **a)** Disclaiming warranty or limiting liability differently from the terms of +sections 15 and 16 of this License; or +* **b)** Requiring preservation of specified reasonable legal notices or author +attributions in that material or in the Appropriate Legal Notices displayed by works +containing it; or +* **c)** Prohibiting misrepresentation of the origin of that material, or requiring that +modified versions of such material be marked in reasonable ways as different from the +original version; or +* **d)** Limiting the use for publicity purposes of names of licensors or authors of the +material; or +* **e)** Declining to grant rights under trademark law for use of some trade names, +trademarks, or service marks; or +* **f)** Requiring indemnification of licensors and authors of that material by anyone +who conveys the material (or modified versions of it) with contractual assumptions of +liability to the recipient, for any liability that these contractual assumptions +directly impose on those licensors and authors. + +All other non-permissive additional terms are considered “further +restrictions” within the meaning of section 10. If the Program as you received +it, or any part of it, contains a notice stating that it is governed by this License +along with a term that is a further restriction, you may remove that term. If a +license document contains a further restriction but permits relicensing or conveying +under this License, you may add to a covered work material governed by the terms of +that license document, provided that the further restriction does not survive such +relicensing or conveying. + +If you add terms to a covered work in accord with this section, you must place, in +the relevant source files, a statement of the additional terms that apply to those +files, or a notice indicating where to find the applicable terms. + +Additional terms, permissive or non-permissive, may be stated in the form of a +separately written license, or stated as exceptions; the above requirements apply +either way. + +### 8. Termination + +You may not propagate or modify a covered work except as expressly provided under +this License. Any attempt otherwise to propagate or modify it is void, and will +automatically terminate your rights under this License (including any patent licenses +granted under the third paragraph of section 11). + +However, if you cease all violation of this License, then your license from a +particular copyright holder is reinstated **(a)** provisionally, unless and until the +copyright holder explicitly and finally terminates your license, and **(b)** permanently, +if the copyright holder fails to notify you of the violation by some reasonable means +prior to 60 days after the cessation. + +Moreover, your license from a particular copyright holder is reinstated permanently +if the copyright holder notifies you of the violation by some reasonable means, this +is the first time you have received notice of violation of this License (for any +work) from that copyright holder, and you cure the violation prior to 30 days after +your receipt of the notice. + +Termination of your rights under this section does not terminate the licenses of +parties who have received copies or rights from you under this License. If your +rights have been terminated and not permanently reinstated, you do not qualify to +receive new licenses for the same material under section 10. + +### 9. Acceptance Not Required for Having Copies + +You are not required to accept this License in order to receive or run a copy of the +Program. Ancillary propagation of a covered work occurring solely as a consequence of +using peer-to-peer transmission to receive a copy likewise does not require +acceptance. However, nothing other than this License grants you permission to +propagate or modify any covered work. These actions infringe copyright if you do not +accept this License. Therefore, by modifying or propagating a covered work, you +indicate your acceptance of this License to do so. + +### 10. Automatic Licensing of Downstream Recipients + +Each time you convey a covered work, the recipient automatically receives a license +from the original licensors, to run, modify and propagate that work, subject to this +License. You are not responsible for enforcing compliance by third parties with this +License. + +An “entity transaction” is a transaction transferring control of an +organization, or substantially all assets of one, or subdividing an organization, or +merging organizations. If propagation of a covered work results from an entity +transaction, each party to that transaction who receives a copy of the work also +receives whatever licenses to the work the party's predecessor in interest had or +could give under the previous paragraph, plus a right to possession of the +Corresponding Source of the work from the predecessor in interest, if the predecessor +has it or can get it with reasonable efforts. + +You may not impose any further restrictions on the exercise of the rights granted or +affirmed under this License. For example, you may not impose a license fee, royalty, +or other charge for exercise of rights granted under this License, and you may not +initiate litigation (including a cross-claim or counterclaim in a lawsuit) alleging +that any patent claim is infringed by making, using, selling, offering for sale, or +importing the Program or any portion of it. + +### 11. Patents + +A “contributor” is a copyright holder who authorizes use under this +License of the Program or a work on which the Program is based. The work thus +licensed is called the contributor's “contributor version”. + +A contributor's “essential patent claims” are all patent claims owned or +controlled by the contributor, whether already acquired or hereafter acquired, that +would be infringed by some manner, permitted by this License, of making, using, or +selling its contributor version, but do not include claims that would be infringed +only as a consequence of further modification of the contributor version. For +purposes of this definition, “control” includes the right to grant patent +sublicenses in a manner consistent with the requirements of this License. + +Each contributor grants you a non-exclusive, worldwide, royalty-free patent license +under the contributor's essential patent claims, to make, use, sell, offer for sale, +import and otherwise run, modify and propagate the contents of its contributor +version. + +In the following three paragraphs, a “patent license” is any express +agreement or commitment, however denominated, not to enforce a patent (such as an +express permission to practice a patent or covenant not to sue for patent +infringement). To “grant” such a patent license to a party means to make +such an agreement or commitment not to enforce a patent against the party. + +If you convey a covered work, knowingly relying on a patent license, and the +Corresponding Source of the work is not available for anyone to copy, free of charge +and under the terms of this License, through a publicly available network server or +other readily accessible means, then you must either **(1)** cause the Corresponding +Source to be so available, or **(2)** arrange to deprive yourself of the benefit of the +patent license for this particular work, or **(3)** arrange, in a manner consistent with +the requirements of this License, to extend the patent license to downstream +recipients. “Knowingly relying” means you have actual knowledge that, but +for the patent license, your conveying the covered work in a country, or your +recipient's use of the covered work in a country, would infringe one or more +identifiable patents in that country that you have reason to believe are valid. + +If, pursuant to or in connection with a single transaction or arrangement, you +convey, or propagate by procuring conveyance of, a covered work, and grant a patent +license to some of the parties receiving the covered work authorizing them to use, +propagate, modify or convey a specific copy of the covered work, then the patent +license you grant is automatically extended to all recipients of the covered work and +works based on it. + +A patent license is “discriminatory” if it does not include within the +scope of its coverage, prohibits the exercise of, or is conditioned on the +non-exercise of one or more of the rights that are specifically granted under this +License. You may not convey a covered work if you are a party to an arrangement with +a third party that is in the business of distributing software, under which you make +payment to the third party based on the extent of your activity of conveying the +work, and under which the third party grants, to any of the parties who would receive +the covered work from you, a discriminatory patent license **(a)** in connection with +copies of the covered work conveyed by you (or copies made from those copies), or **(b)** +primarily for and in connection with specific products or compilations that contain +the covered work, unless you entered into that arrangement, or that patent license +was granted, prior to 28 March 2007. + +Nothing in this License shall be construed as excluding or limiting any implied +license or other defenses to infringement that may otherwise be available to you +under applicable patent law. + +### 12. No Surrender of Others' Freedom + +If conditions are imposed on you (whether by court order, agreement or otherwise) +that contradict the conditions of this License, they do not excuse you from the +conditions of this License. If you cannot convey a covered work so as to satisfy +simultaneously your obligations under this License and any other pertinent +obligations, then as a consequence you may not convey it at all. For example, if you +agree to terms that obligate you to collect a royalty for further conveying from +those to whom you convey the Program, the only way you could satisfy both those terms +and this License would be to refrain entirely from conveying the Program. + +### 13. Use with the GNU Affero General Public License + +Notwithstanding any other provision of this License, you have permission to link or +combine any covered work with a work licensed under version 3 of the GNU Affero +General Public License into a single combined work, and to convey the resulting work. +The terms of this License will continue to apply to the part which is the covered +work, but the special requirements of the GNU Affero General Public License, section +13, concerning interaction through a network will apply to the combination as such. + +### 14. Revised Versions of this License + +The Free Software Foundation may publish revised and/or new versions of the GNU +General Public License from time to time. Such new versions will be similar in spirit +to the present version, but may differ in detail to address new problems or concerns. + +Each version is given a distinguishing version number. If the Program specifies that +a certain numbered version of the GNU General Public License “or any later +version” applies to it, you have the option of following the terms and +conditions either of that numbered version or of any later version published by the +Free Software Foundation. If the Program does not specify a version number of the GNU +General Public License, you may choose any version ever published by the Free +Software Foundation. + +If the Program specifies that a proxy can decide which future versions of the GNU +General Public License can be used, that proxy's public statement of acceptance of a +version permanently authorizes you to choose that version for the Program. + +Later license versions may give you additional or different permissions. However, no +additional obligations are imposed on any author or copyright holder as a result of +your choosing to follow a later version. + +### 15. Disclaimer of Warranty + +THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW. +EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES +PROVIDE THE PROGRAM “AS IS” WITHOUT WARRANTY OF ANY KIND, EITHER +EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF +MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE. THE ENTIRE RISK AS TO THE +QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU. SHOULD THE PROGRAM PROVE +DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING, REPAIR OR CORRECTION. + +### 16. Limitation of Liability + +IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING WILL ANY +COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS THE PROGRAM AS +PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY GENERAL, SPECIAL, +INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE USE OR INABILITY TO USE THE +PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE +OR LOSSES SUSTAINED BY YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE +WITH ANY OTHER PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE +POSSIBILITY OF SUCH DAMAGES. + +### 17. Interpretation of Sections 15 and 16 + +If the disclaimer of warranty and limitation of liability provided above cannot be +given local legal effect according to their terms, reviewing courts shall apply local +law that most closely approximates an absolute waiver of all civil liability in +connection with the Program, unless a warranty or assumption of liability accompanies +a copy of the Program in return for a fee. + +_END OF TERMS AND CONDITIONS_ + +## How to Apply These Terms to Your New Programs + +If you develop a new program, and you want it to be of the greatest possible use to +the public, the best way to achieve this is to make it free software which everyone +can redistribute and change under these terms. + +To do so, attach the following notices to the program. It is safest to attach them +to the start of each source file to most effectively state the exclusion of warranty; +and each file should have at least the “copyright” line and a pointer to +where the full notice is found. + + + Copyright (C) + + This program is free software: you can redistribute it and/or modify + it under the terms of the GNU General Public License as published by + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. + + This program is distributed in the hope that it will be useful, + but WITHOUT ANY WARRANTY; without even the implied warranty of + MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + GNU General Public License for more details. + + You should have received a copy of the GNU General Public License + along with this program. If not, see . + +Also add information on how to contact you by electronic and paper mail. + +If the program does terminal interaction, make it output a short notice like this +when it starts in an interactive mode: + + Copyright (C) + This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. + This is free software, and you are welcome to redistribute it + under certain conditions; type 'show c' for details. + +The hypothetical commands `show w` and `show c` should show the appropriate parts of +the General Public License. Of course, your program's commands might be different; +for a GUI interface, you would use an “about box”. + +You should also get your employer (if you work as a programmer) or school, if any, to +sign a “copyright disclaimer” for the program, if necessary. For more +information on this, and how to apply and follow the GNU GPL, see +<>. + +The GNU General Public License does not permit incorporating your program into +proprietary programs. If your program is a subroutine library, you may consider it +more useful to permit linking proprietary applications with the library. If this is +what you want to do, use the GNU Lesser General Public License instead of this +License. But first, please read +<>. diff --git a/NAMESPACE b/NAMESPACE index d75f824..6ae9268 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -1 +1,2 @@ -exportPattern("^[[:alpha:]]+") +# Generated by roxygen2: do not edit by hand + diff --git a/R/hello.R b/R/hello.R deleted file mode 100644 index fa3b065..0000000 --- a/R/hello.R +++ /dev/null @@ -1,18 +0,0 @@ -# Hello, world! -# -# This is an example function named 'hello' -# which prints 'Hello, world!'. -# -# You can learn more about package authoring with RStudio at: -# -# https://r-pkgs.org -# -# Some useful keyboard shortcuts for package authoring: -# -# Install Package: 'Cmd + Shift + B' -# Check Package: 'Cmd + Shift + E' -# Test Package: 'Cmd + Shift + T' - -hello <- function() { - print("Hello, world!") -} diff --git a/README.Rmd b/README.Rmd new file mode 100644 index 0000000..d0a09c1 --- /dev/null +++ b/README.Rmd @@ -0,0 +1,57 @@ +--- +output: github_document +--- + + + +```{r, include = FALSE} +knitr::opts_chunk$set( + collapse = TRUE, + comment = "#>", + fig.path = "man/figures/README-", + out.width = "100%" +) +``` + +# geodk + + +[![R-CMD-check](https://github.com/aleksanderbl29/geodk/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/aleksanderbl29/geodk/actions/workflows/R-CMD-check.yaml) +[![Codecov test coverage](https://codecov.io/gh/aleksanderbl29/geodk/graph/badge.svg)](https://app.codecov.io/gh/aleksanderbl29/geodk) + + +The goal of geodk is to ... + +## Installation + +You can install the development version of geodk from [GitHub](https://github.com/) with: + +``` r +# install.packages("pak") +pak::pak("aleksanderbl29/geodk") +``` + +## Example + +This is a basic example which shows you how to solve a common problem: + +```{r example} +library(geodk) +## basic example code +``` + +What is special about using `README.Rmd` instead of just `README.md`? You can include R chunks like so: + +```{r cars} +summary(cars) +``` + +You'll still need to render `README.Rmd` regularly, to keep `README.md` up-to-date. `devtools::build_readme()` is handy for this. + +You can also embed plots, for example: + +```{r pressure, echo = FALSE} +plot(pressure) +``` + +In that case, don't forget to commit and push the resulting figure files, so they display on GitHub and CRAN. diff --git a/README.md b/README.md new file mode 100644 index 0000000..61c3286 --- /dev/null +++ b/README.md @@ -0,0 +1,56 @@ + + + +# geodk + + + +[![R-CMD-check](https://github.com/aleksanderbl29/geodk/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/aleksanderbl29/geodk/actions/workflows/R-CMD-check.yaml) +[![Codecov test +coverage](https://codecov.io/gh/aleksanderbl29/geodk/graph/badge.svg)](https://app.codecov.io/gh/aleksanderbl29/geodk) + + +The goal of geodk is to … + +## Installation + +You can install the development version of geodk from +[GitHub](https://github.com/) with: + +``` r +# install.packages("pak") +pak::pak("aleksanderbl29/geodk") +``` + +## Example + +This is a basic example which shows you how to solve a common problem: + +``` r +library(geodk) +## basic example code +``` + +What is special about using `README.Rmd` instead of just `README.md`? +You can include R chunks like so: + +``` r +summary(cars) +#> speed dist +#> Min. : 4.0 Min. : 2.00 +#> 1st Qu.:12.0 1st Qu.: 26.00 +#> Median :15.0 Median : 36.00 +#> Mean :15.4 Mean : 42.98 +#> 3rd Qu.:19.0 3rd Qu.: 56.00 +#> Max. :25.0 Max. :120.00 +``` + +You’ll still need to render `README.Rmd` regularly, to keep `README.md` +up-to-date. `devtools::build_readme()` is handy for this. + +You can also embed plots, for example: + + + +In that case, don’t forget to commit and push the resulting figure +files, so they display on GitHub and CRAN. diff --git a/geodk.Rproj b/geodk.Rproj index 497f8bf..56252c4 100644 --- a/geodk.Rproj +++ b/geodk.Rproj @@ -18,3 +18,6 @@ StripTrailingWhitespace: Yes BuildType: Package PackageUseDevtools: Yes PackageInstallArgs: --no-multiarch --with-keep.source +PackageRoxygenize: rd,collate,namespace,vignette + +UseNativePipeOperator: Yes diff --git a/man/figures/README-pressure-1.png b/man/figures/README-pressure-1.png new file mode 100644 index 0000000000000000000000000000000000000000..7bc4c8f7db547c559fb01ef2a8848679c60e06a8 GIT binary patch literal 22985 zcmeIabyQXD*EYII2^A282L(Y|N(BRu*dPcD?>Ya~*I5_n>cwiWWkk!;w^#UVdlrffn1Af^ zk$aJM$(?Knt9UJf)h7J=zr^v%qy2WiIh>|>pNRJjOHA<>=}}r`<&SL$76m`*E4!9c zP1>cux!zjMmevtvOg!Y{WM9Ky_xY#jPQhiJ7y^3_g_z^xMCVY$Bdi>6UDoN(y_GR# z^{s!VYI5z%lJ7?GIJps~`%eyIQ@-vN-V~#!!t6i&e=L!xqzQghO^=HZ+124FBKyoJ z@I*W2xZT%F_B*Rv4yv(Hcq75Q6oh927%!?6EQ);fR4rgmCe|sm^L#PV|5c_hqz)s# zD*nuvd%B{Fr>&`nAsI5TPTYBI&-)kf#=?9lrQ zn|r7tC9}P+Gn1{CL{j(Z7h2xDpEpsaFF)?#Y?5K$f^TF^-*H*;qGYho1{Gb%=q1YY zNwmStwTcD-2CaOzPhR~JPG@VdT+-U%j6tsuf8D>_f6`I-^PaIm$cS9bGKCWFT14@U)E(iWyfHA#*D-6Yi~!aP4oVHor&(ZIuqB`kMAAx!1A2w zQz^PSbEQFrz`fK;YpfUJRF3WxIjdwEHTYFAaZFlp*h?j=rTc*eLIJEQBhLc!*> z>%lZko<9ah1;01h#@oa{81nk6HOy(FW25tc#x`EutiyT!iuuo+q;~}4rV)4g<3-fJ zaqzPkJQjHW;k|*B+~nyekMQqZbaA+zLHdkBs|@$cTPuSM_e?K}blX|W%)GAeLQ1#7 zahcsxf6Q}Z$y)w+L@y~sN%z>I%;nMCYN~^Wlt6Ee_h;M1`}{b1ZaQvP1j&TnTl-KB z`B&bVUF@)#%B?>+5?~seUl2Y0^h53F4?Th$E>`m6W7P>PGo_PdRIRBe3nEO$P;Xti zc-~t{?(I_aIj0!f#^dtrFyB~LFXSZ}&ctfjHmSenW&ERJ9+fGW>a?cd#Qafj2$QGN z=R=LE+?nPKnweD%Cridb)Hk;Z?fvat7x!hXjv-WW!amkMqZ8pL{jPd&5Ilx=C5>cc zP^|DX9tz`MQxrD*gaLogz+c3dU>;n-Oh~{w_!(mu`Oi~2ef=mD8YL+ztmK3-H*hS5 zw6k|((RhmX?aFhdu*A00#8b4NRD+hLQ#6QOZ+^=5O;lZ>)BW^>78CO+tuFz~2&;=J z-SFwq(koN9t(M~_cC40uGO023gf=o%ZMxCchALKampQLB@ER+yyONM&6QfZWzyHx= z2xPmp8F&H{kJbzI`=480s8B+TKmSjRrcK4fPPjbA#C>!ZrhN9{f1|u335dNuhrVn$ zdMF;c1o!ASJyta8jG`si&4YIm)1t=C9FBn4HywpxB3)8@{P3AD0Q18S|7QUIS%Lqo zz<*ZY|H}$2p#ufHFYAB)I+IhynVz2BBjuHJ;F!Ew@W@!?(MHX29AZz&{6waMB)LB2 zMto%m<4!kOT%YZsFR`5nKgD?aV5_El4fAWBBafOl~Wt$x@aliuvE}e50J=zP-kE|J$Vtn#I-~^2?*O z^wB!)sWM67$MES7Jnt)l7|*@USLaSG?`lzaSq_$~spp%Vzi{C~TZZbzbnS{#)6I_N z?X|g(XJ@b1txUBWeh#3_)vduyzms&U;Z7~_p#!Bg$LPjMpcj9BB`aomqB&w`bNN_i zk1q**vh73@*S+`H?WfLIGpo=YycloP*K6ihO^#-X!q)nHyx~InQ|IOJFmJ45b>+^> zHrQd(B!~Vwm)u$l)m!dtD=8&aUwUhQAlLf4Nc!D(i9bAM51&U%tbx%z@Nj;htjL78 z)V!N>sy*$+)DN{>1IgMjwumXLQqy*(s4J$y4Y4;=SFQ;V9>gEw7no^s@!=J&>vgYg z{+q0jay$5Fx1B=%viKV{b5J~BQd*V!JyO_V^UN#|GImM_k+UU`?A1Sjz zeK<#ARvfcjTqwb5*2pT_e6diRgZ1{ZHYXP;{K)e|78NIPDBxW2FO`d#NMjL@q|F9fFrGG$}=a^1Hb zT2(D@o{fF5FMsU&{cQIM5rwm{Zrb~Nug&E6a)eEyxC})#1g;Wys_p-KoKkN~@ncI+ z=ArQ>V3S|eW|tFK4IQc+tB;7d_3TV-u3`O7A!9E=cYzldiF=~f!;WLWX5c+~s->*3 z*ZxvVB36iF2JS>zr`8gANyW1%mMV3tAEf*N= zHS0%fLsDGVe^NTid|QV(M)?Zf%MoLJ^6S8&+wjQP@3z=&-msqzofN9bdwJYlNPzj9 zJq8PDtE((^&L0FcY~&ppO4e>6Uv`qIZ=@8ZBu7lz%G_so+x^cOpbf&-r1Wx;^=iU+ zQ}cSSU2I$aet&Um!?9@Q7a1Aj>2wEA@ah%{^AGtj=8Ui4~{?}9%i;VQ^#m*zVqKXc7V@l?_q0pV{Yv%H%s~8o@iKB@Z8^Z zEZJS_8ykOVb?wEF+e}uGs80(ew~<7eZ0u-3x3*LyshHTIX^E1+0e>S$)0Q6D#5+ON z+Nuu*!ab3wnxh@nB#E4-4^K`+buIn{5hrlK7F1r#3)=-dH;*{yyvVLAp3K_19mZ;? z`N{QQU?^`MVrwlLd1|+g5?kYTBBgCF&bx2XKg;F?o!5Gd8%49{`idf&h4%Yb2;Ju^ z))ikL`Fb_7%3;hqk<9ovoSdOkt!j)GqA7CF{`Ojzm zvp&C_(Epvbkxhi=s1F_}bF8m)-xkRc5I;JWA2qAPFeVEv`V1ypUMUoqDc43^j1Rq_ zccZGkJooq1aO3MDuUlzTf*WagdHtfXQtj!3 zXQOGQkcT(EydIICpU=)V+Vl1g&Y7S;bnqz52Xw=w8Vdkd$WMqk&h;|7Z>?N*=eI{G zWNVf*NNmWwyjGhm8Dj9Wza+6}O6|bMVqlL*Roi2jfMYcTY{=!bpi6m4*DHqC_Oo0* z0L7)T2%Xy*Dp@;)?=X)BWQ=%OR@KJntBrW;q|CBk!#OknBFM$@UpURG6bQ~N>Oz!F zcv$~mVC|H(A!<53074Z2lbv{gwAb1%I~OiKJ=_Q4c+BjxkCFqVMQP$GNK-@(67Po) z1_&WE9N`HdrBB)&SxqO`{O?kzV9MNGtd4lV{z^V*0OS`Gayrnzxs76u4Pd_&qg zGr67__b|D0`4Am+yuEjmQqaxGC@S4GtXG&b>^>GtD7`i6Ya49O(Z&J(Q@g2>B z=u<5YEB-n>-fz;qiH_!Qi74=kxlpSc0A$VtObco4LD+j9t?M`OHZENft6d-6S+ zqOaD!2EZ>1M$3FAa=dnVKf`t+*6}tZ0){&qi#D5M5fd?-yobODZv($L8^>;{EhRCe z+BF>O*vYS*sycHg1O;a7OPONx;|_5xnzj-fhN$hf_=(G+_X@AWY-G^=fzkpK^VbvM z<=Oe{QY%5x5CorJw7Bi_$6y{@2#ky4Bof+rTT=h#*~(AJ*Fn3-qL!N+<&pm2$LBcZBls^&INMvmR{w;pV&+ZJgc{w& z;ZnhbAZA*zKei&F;(g|-nQzluQj<+UL&@p|X5QD{aY|!gwp_yCrTXIm`q|{GJlxZj z(t{_>KaZ^sc}5_J@|@GKcR+?S&3O#fp@%O5F>3#uL3A*IiB9vy$_)_$a(0#!sfci4 zAKcnF0oMlU8+>y~g5RDnE@9?--5Lxf`*Rkm#V~OQ$O0j0jbdg2pxTlDgj1(d(`9XT zDp9>S<8{7Q>5SVQ^*>|wedtyA$YHLxbH`s~iD8N!P57D!@90=zC$a(Sr=_DHesCy> z7f5JPs~F$ukIt1H4jwvbMr!(C<4~A_0G$MBk4`eNZ#D|U#Liuk`p^wli+iCujy-yD zbW`hTTGX@bi|K!z06b!^Ew2TV!<%SJ;lZt|jP{486N3f=Q=W!c@GwWi6IJy>T`8?h zetzg0hw0I%X{`6+hc|go0@rz~JEG&zePFv`1Wlx2d~YjuPx`S_u=rpsy%V2uv(Bvp{%OK2w89l_$kR(B99whMd)~xltWHn(=4#= z<#%)ox&_lYW-Ug@v+{mlVIy_|MDV525V`1^E-RDg#r(;`FtBia4b_5!gGWNi`i_=? znD`5M%j!(G6dZ6dAGx6vNM3UFzntvJHw~F*5Dk}L4qjt7`zOo9U*dv<*=aInHv zs?u!}Go_L5aGx-+cd)6jdec^cn*!iQ1k4PTV@@v&u=bI ztTQE8*;$`DWI`Yq)Zp>pCa|ew21aokN9Qxi#Zg_7!EEtj&peED#CWvB|9Ck}cSxS3 z5u_THS2=$eLuiRhz4U2XT0%zg{#qAcZ|-Ag`?ufA~q{FJOQ0B==YE}p*r`_2Rek9qTHaIvsniaMyhQJ%W5z% zB2s>*7#oZ^+CM)#Yq+&C#ijrGxY}D?? zZ#c{@WIpXN2XM{E!O?hG=)`mVo~zaG(0_4sy4X}!H8a{d6>HG})HhT-c2`w5f4mS% zhUjH8T#Zp1d!xt=^76zNGXb4#WsX*@v`WX&t5fY?Ru(%jBuZ??xONo^ny3Fy`1UeN ztH?68-+g_+=Et+^PYWNK(KPToFMWl`brH}(5E75NvNZHn*ybEd|2I-E!V%ET7+{G| zl`Qp53w@l!BZO`ufI}g)w~=IO=myV~mNW(i7gCc5;PRqs(E6VPf?{tt-iG1nsf0vd zHIF9w$t)XliS)a9#zbuhbBf4g0)=!1Ms7yM27;Tn4r~R5c^)603*=E)TZ+_6(SorD zFan!Tr&S}H`FJEXZW5kmB~wTZ>Q$RSW!*`761A^bhBav?eF!>Gn2Q|4Jb04K4mzcF z>FnzH651|Pj2G^{O#oOVyyCpjEV!Mi=`xj~kZ;l&*%jc}mPC{_&dTPe9;l)UlNT$DwEb&S-%&3FgFZU8Vi0L@b{bkxt_ed4E8X z*A1Mm9G#1RJww4CNNz5TjUjmru*|g^i$54uvlE`=6z7ddDw+Krmq1_1CgAz8LD%^( z0oSz{i|YqY4jn@<`|aJ$CZT;dB)s(7cWb4F@`>pUmOCRX6PMe@0uKl8Cjv1Dew`mj zOwYAY=(yck>6!NqAM)64%zrre;0v{pEih}1k2by645|OD$;WsvLBj{tUKoSJic+s% z>;jCn8G*-ux+pbGS+F$J^)ZlHJ!dc4i@s<3*_?u*aXxz zX>3LwQUxB&tIU-rq z^p_u{r;#^I?Fg**(?c$P>2ycXB8|t!t4;q=;DW>9M19H}31N~6_Pa@U-?n+=qNtPvsofpXAc}EB@q<%JumnnoGhKCT(-a3FBuNjA%IIXI73-P7(YZE*%rV?ITRc_uIbe^DY6@0@V#1d}oRsK7p_KiaW z3p!eJjAo@?7oq`@&HSkc6wASi$Nt7MGQgSNe<(Be?<=Vn=L8xaFZ3A4`w3DAbopPa zf+|D5-H8_RR&Y;3U1GFCe@xZ)Z8dl>qhs1bX zgZ+cNesDO&5(sa5rlzKDolXbrlbF6&I!6D-?Kga(kS0M(Q*(L}$Frs+!B@EBivZyEa2;{uqs@ELuazKJ(u_eMxCJQTY~qg^0_8jL_dC zZv()DsD>EgHLc1QpG@ZU*o$n$XxD{apbue|Ynsvv6goJMUS2+4`Y82c>wBAk0j0T% zabK1qD5~6HrmIn!%v^Bc;El+65=PJp-&hU!+y)CLYVXvn_}-E9T@fgjP>Yh!9yt%M z>V3r5+Kx9|=7b%Dfdt>V0Vp_$NRK5iEB^pcZ*A zZa2H;wQPN|PmssXqIeX~gG9UeK`m{k?>JU%-8!BXp`2R1+fmn#mKdS!kE2zy)ENmW zI75L{j|!K!II+skcgYkCeLUV+t2}sFEg{=c`jp5B*)oS(+wbUxgg87FxDxm{>}V3Lry$J@XP-LCSh2}yQ768>zkM_b z6MV=|rNZrwp8Ve}&ypzHy@OYIe+ePwrD9d>r_tmg6R$fna zXc=AY)`R~f* zpw2#W9AZB{KQrvjH|5g%==+W0DHW**EZlin`mo;#2<;MP)$ZC$1XW>dyE^>rSM%80 zocL;d`>Eu4G%A`bE$a5~u@je~gXqLWHH5J^dRf7aThTA?{_B+lX*oT~AJQ@~1{1Jz zWemTwg0}12RUt1Z6ia-0PQBZehv}`0{m&z^fK%JQ&vxJ=OazMqpp%~N%3?!`!8hj1 z6_KnR;hJU#%2WqkX0jNRUeyH=Te}m!HdM=XUAJu2z&JpQ#A@EaJ4pc0+JObK84FXb zles>?03eCW+a!)ZUtdh+hO>h0SXiD#-!&-I1xUy8DX$<%u7R?>k_9rLFz_7pZ|{9b z1|p!=mMQ(hZzH{P>NQm2qp+^rt_`_=ilCSiHBj!H2NM=iP*6yQ3Z6oRi#_-GY>zIL zmj6aXa4JsaO~8Sfe#`-CwFOCJRGJ`>k=onY#HyPvH{cU^B=}BPL*#EZ8@N?>v}(5I z1&I93TpLR2b5{hchtW|$uJ1@Fo;oy840>Q@^I`RZ!^6j&w#Yd(S$d5h|5rlNk+9Nn zelSsZGFz)GSuS2M^@VY5Fe895%~YbvRGF6sZOM{cjz2Y9`&JIt6Qa)|Bl6_`MjycZ z=D*hm;EiS?)bZFGwY*fy?;Zd?df*(GWTXkEgR%a~5n9Rb9C?244KjpFf7Jl>jS`%A zNIU-@$aKEVot9TO8||deJPN;{_&MLjj8^?mA;ekardzNg>%o%Hmf%3OwoY`V*1bmI zpj2vIg)F^^oM_d(54a$j@cR+fDVPQj$EN=U^--YYB7_a@ggCU~ssaIN+LVrOCoxbVSeOE#hz%4yQ5tt2A8akH^)-b3jPsj3cH)d(p^KygbD~vGZpx%k znjxqFQs>j#J?Bq&)JR$8a=xNp_)ZgAkyIGyoI{QNR*yl9=h-q2_2l zitWTYNL9CLYnqMpF2V}~35wBE;aWsluvf>H^D%-wMfi|*#A87!G=LmaH6MIB&1E&n zulVZwhkxrs7Ae&mz6F_oN^N1hwX!&we2$&_p zU5J*Yy`vpwLIgHdYrW=%0Q^%wDQ>%6Gij-wiDi~M7X|90ew%s@E{`22({FEIIi9up zJzNQFj5(v!XYBqI7q4-@X9sq7<#Oi@$Ddd9=}x_R-f?~rsaQ;3a0bxPh_?ZigN@i% zpdG3Q@rv=o767rE7RG|)Zc;8X^8m-9|{BN#I;H`V+w}Wc-hy<=8Myx4ryd|QkN}=TERB@`wff_p7!^Tr zHjxR{83l&lAJ(I@9{ozvs>|JyxGO9mhjBbV)*kO;2!vYx*b{ZX4Wn8OJNlXhD~;#Q zgK7aJ3+dk_l=x7`13~iHhY*pV-%EhUVBIcrz1BG1oryy|f5B4Fc_~>bTeF8h0N^#} z;A*)rZ5*J5ADgrC*M7g73y+LLU1{y-fVq*+1?}=;d{OwIg}Pvo)ez^FH90wUKkaa@ zu!LoGO2F@6EvlZNTk{ZMKPBblC{FM}AZ@GcCK4!_#NlY*v&h-h-_#NZKIE2;$nclx8j5vv$@ z2d*UH&L1I+L{6BJy&l&QDfpG8I&b)J%-+N}FnkQ2zRU4GYQtd0>9lCYOnm1;|) z-`TE--gc0q!%#UtpkdU{v~Dl z`9L(x8sCm9{a1YkJ&Vm=AIz3rEV4A-$d+f^91h&F6y(ANLzV6dMV4Bi8MB@xxG9TQ zEbX<8#d+f%*)PyWD~JtD0+Xq!X|CtKM-^scypRqM(JZ|p(Kj3|tL8G%v^{`>WY*Zc zwtlUPft2q0&jE$P`)U{D6TF5NfjqoALqx?h{END#6+zW0|6VQhHS8-J{bi0hz*K*k zpM*+sJqXQ`@4nOX=(`InJ$8a7*6(dLkfQb6+ewW#h8%hnnDD_XE8u13#wxde{#Ywh zeS96yfINZ7#E9sRMf;M9!4wlj zW0wOlo7fX3zvw8-LV`RJeGO-&HKM5B#y^x@O+mfzJ|Y`f>QI#P6D*1aXfPt~b!TDG zmXihl*QX;f`A)e5F3bgJv`m%=0z65;c95S61{v0eOUCiL%{`WE_>Lzk3V_u2QZU}H zyJQI)qPWGwFX~vHdoksVZS?*9W0{#W!I$pS9qGJUqD$f^?|n!lY%ctQcnpuK0R)e2 zPQ+8hQVlvzb?3xKu?#v2#FLE}?Dj-5NgRs(W-pmU7C7o7{0EvEXY)Hr0}9uiJ+I8e_4$7GuhCE*Kw?|@asx1}BpqY~49wAH zNJhY#;QbvkcLP|tT)j^Oybnf1m2?ru1eP~A706{Yf-ehBKK8*?@N=|&u;YK6lY}J( z_2a=LaiS84Wri!0tw!1nNPq-iLw_kT9YFn4!K8}&J-NS+d+qsZ z+T>B5<_^e0gEi3_)T@Q-fI}J+Xf0lKAV-~h*$}Dj0mh(zvjQ+i0w4v0PNmxtFaT2C zm^h<8M1p}3F6xFn_Z#t6ea%At!Tbq_%)WawF(2wqx|p83s}acYwwY`>&n=WHSj&8- zzG%pUt;}JLtEit_kW_1;z9alj?2YC4{T*Y`ysoZJq5YlqhT6?u^PJknA72_77G2k7 zFLNZ2GzNSmMpr9?foAh*k%8r$lGJTY6dS*04`q27&swB#1ybRQeC~HX(_TJhuU+X@ z(hn3SMtf)9XwXSP0mH64^F;g$UYiqYzoZmsRNYnNK^@Dx8(>%UuzLuAvH?FJ!9;T@3z16zlVPD*;Hi;MakaDW4b&H)xqJ+>t9eF^xwGOUY9OV`ot;3x+?gdQzL)k=8FP)6 zFav^)3Y68@Z%S#rU5yi0$@g(8h#>oC{<(BJ;vMxPSUC; zDJsiz=Lb!=Kx)n-!UJrvL;ulBaYS3vQKPqA0ss*JHC_gK4uI*lJu7^`ybtnMXU1&8{K ztHw<+UVZP?Oow`}uOcdY!}VhY;hb7#Jv9~f0G|I1VgEwsg^s~Dk$wjUnukq!d}K1l zI$L96{Mn|h@ZEBqWkTgD{uO_b*10>e;RBebJ6*)+Pz4&3(mkL6pXJEFeW*^6 zb@K}O3H4bO^7^>#=9fE=pc^dZYj~B<(5-$xr+KeUR!VA_$y83zqN~S;=GRrr#;d00 zy5SGr#fw>BDr~Fhf9@o4-iH!&BtPhwCuN#F#tYPpUu>*q`*)mmMg1$e?Z+JVH8dG_ z132rvM3P6nS%FN|O_8tMZ*+(L0A`@Mn2&CLE^Rb2-<>qi>Y2t?UJ*pSA(?ybh4Z-o zl%f6HRy$S4UwlBril~-3Sj+&0aWYaAq9aF{{f*&5Yt^PWfxeydCUV{e9y)@n9g5)t zrPP+WRDcv8FaT_O9P+BhzmRHDXYNe0Y5hkK!kCy6uTN*>M2AN~>JmMygjH_B5rl^> zbDX#AX%<;yOT?AzjV7P+YN_0{sO%`PuXQXL3)jemJHI*Fe~T~pGz&YuE;Rv6$fc~r zAj_~0b7758ERJdFsc`laP6b!hG=kkIR=dc{B|J;a*wp<~K` z)(6e&l=~)&$%aBktuTu43H^`S1!H^}Q`RKyDF9c(H;on7oSJj5708qaT^|sOtp$%iy+9KT>jU7 zq56+Z(A%NbCU)%uQc}$A|JjqUd(GY@$T}Pl(;aP(O~Wb%yGvfOWLdi+Wp+~|MFM4P zc5f)Qr7jM$+@*HUXf}F2n&^%@r-4H1q*VqPsyUWSuev;!dk0Q5TusE{pQY`za&=J6)UM#G_weI;Eq1JB zWxA8Ctah8)xM=paKRE}3)nK_t-UwK<#b^0YQJ$I_b{*)E&WIuEqP^$jBJILKq z`|~~Rn#BVvm#t%MApBrivv8U(m8fW)5jjRJ2x5FZ0>=s9C4^fGXiDK|f;n*EvJPO!SB&*MLE%Ge&1Oc(LzY>jj{!l^H9 zS`ZpP7C6(Ni}lv4Xzi+yE8Vnp@cIoEtJS_`LUk9{AxGz_lnD0iDVFfT_s>T``lnZa zGID1NH8ZE5l{E04tai3x&VJ5FwsHt7 z^ED*6vxwGx;^?W9^@~=+fnx+t0MmPZP^s*;-#Y+Y#?)!X8)i zfR9USJ9650g^;tjx`B)M+0GRi>hsz5nHog^HIR(EryWP_jPEV;*8I6IqUvjN59;HH zI(D@ERJ4Cl>%VCB+qq}%_uBTVt#QaL)Q0`Bm13+VW>%#he{Cx&Yc^OHK@mUQw zBl)nC{B15`+}2(Eb0sJaYD4p(x~o2Hvl?D^b`^@OYF?&4%wN5&5wSw_DD&37*(Tk) z$*=c!F*>IFW(8Bbpw9V^pFy7VP4QH7)EjQ@Nm`!m@HhCydHl4PXJ+5MBx$fqop#bt3mmcd769YEXk5yGcV=p))n)v2L7SDI)}Wgw-ZUr-Yg%nhRzTB2LrUp z0f7!QBJa{lF7I5iA3royPz&s4;YDKt0P!~eJh#Loh;$`sBtZOLf6)}c1YWe2dkM|zr^;Ew)hM7 zhJMmPduDeqF*1Jg)DO;Sow?;XgzfUtEV%tEXe}F(?#%I~g~Yzk*^B!^B)*ky<3U+s z{aCQ4ASBd}qwVvEnsgL)f~<(z{UYY{aDb}*0^i-qT^|*y#}8G2c!bw! zLD%FMQ_bKSsV9SgfWS!ezAQH13G|%bq?nH#xhIBuYH2Ts0{gzn-6C}#&1qtKAFNg# zXRCtLJ-0UW!W%HR%I?xQYi8bk*Kl@&;Y}b433*1EsMdq@d2L{XFkyQ= z)?XX$2CS017?K$MF%x2CFo4%f!8`{Syu5OtK9YlnV9`HTl8AJ2D{G%R;*b_j>(aUC z1W|46K-t`1mQ@>aE-F^x9it36k=|1KjLDBZ>`^%Uaw2a)RyuydjSCY(V>qF8U_%~49z^ny;lklv7{;I;HKt!XTpD8E1QdqJ|Eu9NScl}Yv-L9s zk8c>{@`0{Wt=aq%dCjbCm-L8TQe9!pG75E?3HdI75SdG#WJOLZ%X^`J z>p|hoOV?`1cu6cCrYk0|;eY0dTfoYFohkWT0Recouu>?nFAI{{XaI5&+dl;ar5l zZacrR(DvD+BruAX_A4F!0JPTFd%}yMkZ(yr*V`CmoM9^~c2>1MC6;y*qWMrNiUX`8 zg=n5&Fkv7=an|CuQpvn~9_guY=*&=!fZ@7cbJhvzWQv^6*4-%&tX=y2{Ii;k{4l5v z^Ub<4O*!tqtyV90dZ!FZ=?v&53Ex$9IT;RfhIWkH&U8iQ89?I=EAyc4Nks#k%3T_( zH?G*4&gcTSmDOii*2oH^o^w1m<8#YwMC!5%PfXCcb+7qr%yc*BVzJGD79bBPjnBOMaxQNc-BIqsdaj{a{?fKnn{E9JXhs^YJ^;>K z14KVrt80B$8duFa-g1^s($z0-Ge*uZkyu=_8ob{lTw)Jhdg?;ED1+ zBxRsJu|{<4B-N#=$*aDl!w(7Bhfr5wfRXO~lcNSn_Abx~ngz-(<4ti*y586Rdz{Y0 z-p9CNyUq!?+%>EVUCbsNH)e@+FUKz(Z9J{2c@K(~9EzrZOUyhbOoo&F+wGIK84??j zwCdqvdzzg2=|;UFKkgIf9XMjB<_<5Xa77sUn5`1nZ zd?{*Gj1%u8GvJVs_Km{@5zJU!SRr45iCu&i=hbYfC)XiU??c1q*$7~0%^W;)RwU%mXZ)Lpd4tA%g zDc;l;FBKrMm>m|@_T069r|~ZT>ENf6rK9sz`{Z-$|NP!zQpeV_6=H7$DJcqC$B-U^ z&Z$yKrI+vYzdRjaWnZJY^jUZxR8xzPg`X?8_vjSA&A?y(9pw{fNgUc&Rv{9Y5zUq zcu3W`Ec5R5^A>^F7I;-ngIBQ-*)? zy$Yo#DgK>Lq#g|cIg~KUyel&ZG*cZrpLpE2>^6aBY0&wGa9{UWp;pSoS_i`byVfq5GP!roIs2vq z?o}E2LFfpCRO|B%eq9ycY?Rd9*i%^sLa(_=W7?1fA{7p{kr?4Ya*~Rt<*b{_^lQb2$(UEYiE)$HdY3k#MYj%g z4bW$QZjl&!l^a^MjeCnqp<-n8lylD5ifDmb5Ny`ZGO6k&bhqd&i&yO}>NO|p?p+A% z8d!#JLK2=@4|OnaoquCc_+Sh17W&cmbFdS5oj$Mrt8(MPwroIV(GWO?Xdgy@_pUSl z0P0{={Ms71N-VA&R%6573zO~F2x4hsf7Le=2{TP?XaY&F(&CLyG_gxmfzu6rjbdR1tDQ;s_Eevi*B z_A=#fZM<8vx;430_-b*RQ?m*0b3MPS#k;RX85Z5WyVlOvAiA>VyZAbsgPF8j@|FF2 z;~^wGM!LJT+qX}kudPuecP2}c)}QM%?~!x7ETrflB*fiX=q}Z(Q6ZYwQ|Vq7wXHN` z`Qqo=wlPs1mp#$%U=+ydoJ3UIvS~NuGQ%PC5@h5bb}CQ6DG)tdR?xrmvooGKw!JNG zudzYsz7R?6jW1~eIAPAOYY_Ib$7h2*HopqYC0wBF(K>;I%1hnKvWJVyB22AknG&17 zhh)jUdV35%QU|rQ;s<2#-8G2?Do*9uyl&d%SO1>llG|%VcT}!g+E2B8!cK~7n~Zop zkgM-O(i=O}nB1}@`dm~S6Gu&bNH_bX?%IPqEtP8yswbCile>fV+9jv1;&l#pKyLxrvG8=&Kk^#91x?V)vkELvY98F^fI0~Z=QJ& zS>&G; zSn5+8GAO|RweI}S{Z`I2*oXLDv}-ns(WrP z_VU2#fcP9^I!`8)%xIp}zyT`v<{{H1R-lR_dwTHoD|igKfVk=6wWbfX>>ppjmH&L^ zPX_n@=k>`oZazmT*0omOtZODAT%UwP#3L+}_Dj0hBrX2hix@zIS%GT)W6Ogr8 z@<@e38(=P@b+?vdEm9D<R8!1nA9sZE6)R1xV2q(J?|tZ5&dZM9QL8=RmR;@#UPW zGzk3#N&p5ST_ZN|k!aLB^wNew(pn4Hfdz2R(z&Ffs;e(RJQ5xL6~3;f7L@BhKeg*mKwNPqF1{Pp^ z7vi4*NdCv&p;}`Ag{kq138AcvLIT%tXv_QxNrdQn7Swy)KznJSt4rIoy`G}Gm%QjqaXVv@Q~pk z%8W9b+6KXx1l0IshBuKWUI-s_NV<@mmR8SE)K7=V9ATg2K#oZdjeZe6$B60xOeDi~ zCX){Pi{%RsH33%V+Kk;Moy84VN0fRX8BFaggc7|1eDTjF4sgyN;63{58?&g zlOaR1sllQ6YEd-6bbY`s1PVq7EH#>bhd^^^#o&%*Jz)Tywo_VZ7`f*%yt7gjp(_nP zHD(ao388ll#H%X}KOp)ahDryTz^?04m`FOQzHUE*)i-FkYAW-dvx{c|YMx zWUj=|(YBY#0Zq}sSN0;sQ44Y-jZc@dn}94E=A_&9N1D<0f$7}*Nj>eX-C`5 z>UO_u>Myb7xPi`}9foH@!O*A*3UN{PNNZ92Ty;m89P}V&!dFc>3C)}>Q|>Z@Hfl#L z5E8QAxLYV2FF2<~AhlN_ELd4nEAjwK)rkWr7bd&rSy?5T~E8RdcPxOrON z6AoOK7p^%Jdcu)*L(j_7ts3)jVm|c&QlQjsv@jd8rxcpmM!wTUT^ZCbq)tzQiw1I| zFPzw2fF8oSZ}0RQ=N@oKfrdpoUa9PRjn$C6szJlWP@5;wMB7M#{v2>7FR-EWEpP!7 z%DiM2VdYQ+9g8xKTg=EQw00psv6P#)1ECf=S3KrlfdVE3lu;5q&T`O1vT~!-2AVc{ zkN?vav^x=F`y5}SA_~Vze<->+U#0%X*?ee>_te3870Rvn{#SpZ2(d1i8{XYnI2u1m zThKCTdTnAuGk6Xb7zNvcF8fmnF=+a(JjFhQv38Bbb>X{Qeo}&f*^0voc6ST}N8COE z`LleNZnqb0TSo6(ao6Iv?_38infwHgfWKvX-@38J`wJ62ZH8yT;U3ANXuo4$!E0}w z0gWBGt9)RTjimTP$oA)!;M=GoHG0<)=$9)&a&fPFAL=tfAnuI}nnC)NphdhsfUEnF zJwfv9sC$oLgrC6V*Ol!KS_SdWbzm1lJKK*bXb~R?@IGrB=@kZIAPf@6T97UwO^`+|^fK4WoOK|{GIB`++BRB6gE}-> zII+p_jr|h4i@)|vO8fPx#O2Uw%``so*G-Gg&_LLV>S=51QPS~j*K^KUc4MXO+5 zSmTIUaD8hW#y5kQ9}jVhj_sL8W|zj*>;^z7lLBqNsh+9E?hZOt8zY3=BU&0f_M9^A zxE1qgCb{08Mh%S{tKp^dXlA+6tv6Zay|>@&-V~^ZF)>`d+Swnxo=G?k?>o+9u_g?n z6Y`C!xQW_1^c?6oym9hBUDRJlSMIc*h;y}6GRrD@pGP40p|-ExYW4o(E@9Ei`kuOx zGON$ctyk(Ii4g6_CN}U4ZWA$QerdlDMxB?nnqz}%jM)~OSc1$Od|MR8ExtOzA9k{S z3PRIJ_qC`3#HHZqZ(Utc@JCWiRy12g_u>Bnvs1v0 literal 0 HcmV?d00001 diff --git a/tests/testthat.R b/tests/testthat.R new file mode 100644 index 0000000..cb4167d --- /dev/null +++ b/tests/testthat.R @@ -0,0 +1,12 @@ +# This file is part of the standard setup for testthat. +# It is recommended that you do not modify it. +# +# Where should you do additional test configuration? +# Learn more about the roles of various files in: +# * https://r-pkgs.org/testing-design.html#sec-tests-files-overview +# * https://testthat.r-lib.org/articles/special-files.html + +library(testthat) +library(geodk) + +test_check("geodk")