There is no mention of the taxpath flag in the help

[GoogleCodeExporter]

Here is the command I entered:
/sgi/asmopt/src/taxoner-read-only/Taxoner/bin/taxoner \
-dbPath /sgi/asmopt/src/taxoner-read-only/Taxoner/databases/bowtie2 \
-dbNames archaea \
−taxpath /sgi/asmopt/src/taxoner-read-only/Taxoner/databases/nodes.dmp \
-seq Soy_BP4_rhizo_R1.fastq.gz \
-paired Soy_BP4_rhizo_R2.fastq.gz \
-p 64 \
-o 
/home/dbrami/bioscratch_local/monsanto/metagenomic/taxoner/soy_bp4_rhizo_archaea

Here is the program output:
No taxonomy path specified

Found 1 initialization problem(s)
Exiting

The web based execution also did not work - complained of an ibvalid -v flag.
Is your program out of beta stage?

Original issue reported on code.google.com by [email protected] on 1 Aug 2014 at 10:56