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We started to see this behavior when transitioning Bioconductor build system to ubuntu 24.04, but now see on other platforms.
library(httr) url1 <- "https://en.wikipedia.org/wiki/Bioconductor" response1 <- GET(url1) url2 <- "ftp://ftp.ensembl.org/pub/release-71/gtf/caenorhabditis_elegans/Caenorhabditis_elegans.WBcel235.71.gtf.gz" response2a <- GET(url2, write_disk(tempfile())) response2b <- GET(url2, write_disk(tempfile()))
Event:
*** caught segfault *** address 0x33326c656342572e, cause 'invalid permissions' Traceback: 1: curl::curl_fetch_disk(url, x$path, handle = handle) 2: request_fetch.write_disk(req$output, req$url, handle) 3: request_fetch(req$output, req$url, handle) 4: request_perform(req, hu$handle$handle) 5: GET(url2, write_disk(tempfile()))
Platform:
> sessionInfo() R version 4.4.1 (2024-06-14) Platform: aarch64-apple-darwin20 Running under: macOS Sonoma 14.7 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib; LAPACK version 3.12.0 locale: [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8 time zone: America/New_York tzcode source: internal attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] httr_1.4.7 rmarkdown_2.28 loaded via a namespace (and not attached): [1] compiler_4.4.1 startup_0.22.0 R6_2.5.1 fastmap_1.2.0 [5] cli_3.6.3 tools_4.4.1 htmltools_0.5.8.1 curl_5.2.3 [9] knitr_1.48 xfun_0.47 digest_0.6.37 rlang_1.1.4 [13] evaluate_1.0.0
Thanks to @hpages for the reprex.
The text was updated successfully, but these errors were encountered:
Related: #755. But as @jeroen reports it's better fixed in curl itself: jeroen/curl#348
Sorry, something went wrong.
Workaround is on CRAN now in curl 6.0.0. To emphasize, the problem also disappears when your system updates to libcurl 8.8.0 or newer.
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We started to see this behavior when transitioning Bioconductor build system to ubuntu 24.04, but now see on other platforms.
Event:
Platform:
Thanks to @hpages for the reprex.
The text was updated successfully, but these errors were encountered: