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qgrid post link fails on environment build #378

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andrewfullard opened this issue Sep 26, 2022 · 2 comments
Open

qgrid post link fails on environment build #378

andrewfullard opened this issue Sep 26, 2022 · 2 comments

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@andrewfullard
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Environment

Description of Issue

qgrid causes the environment solve to fail with a post-link script crash:

location of failed script: /home/afullard/.conda/envs/tardis2/bin/.qgrid-post-link.sh
==> script messages <==
<None>
==> script output <==
stdout: 
stderr: 
return code: 1```

### Reproduction Steps

1. `conda env create -f tardis_env3.yml`

### What steps have you taken to resolve this already?

Removing qgrid from the environment file solves the issue, but is obviously unsatisfactory.
@andrewfullard
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The solved environment, minus qgrid

#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                 conda_forge    conda-forge
_openmp_mutex             4.5                       2_gnu    conda-forge
alabaster                 0.7.12                     py_0    conda-forge
argon2-cffi               21.3.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0           py38h0a891b7_2    conda-forge
astropy                   5.0.4            py38h71d37f0_0    conda-forge
astropy-sphinx-theme      1.1                        py_0    conda-forge
asttokens                 2.0.8              pyhd8ed1ab_0    conda-forge
atk-1.0                   2.36.0               h3371d22_4    conda-forge
attrs                     22.1.0             pyh71513ae_1    conda-forge
babel                     2.10.3             pyhd8ed1ab_0    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                        py_2    conda-forge
backports.functools_lru_cache 1.6.4              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.11.1             pyha770c72_0    conda-forge
black                     22.3.0             pyhd8ed1ab_0    conda-forge
bleach                    5.0.1              pyhd8ed1ab_0    conda-forge
blosc                     1.21.1               h83bc5f7_3    conda-forge
brotli                    1.0.9                h166bdaf_7    conda-forge
brotli-bin                1.0.9                h166bdaf_7    conda-forge
brotlipy                  0.7.0           py38h0a891b7_1004    conda-forge
bzip2                     1.0.8                h7f98852_4    conda-forge
c-ares                    1.18.1               h7f98852_0    conda-forge
ca-certificates           2022.9.24            ha878542_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cairo                     1.16.0            ha61ee94_1014    conda-forge
certifi                   2022.9.24          pyhd8ed1ab_0    conda-forge
cffi                      1.15.1           py38h4a40e3a_0    conda-forge
charset-normalizer        2.1.1              pyhd8ed1ab_0    conda-forge
click                     8.1.3            py38h578d9bd_0    conda-forge
colorama                  0.4.5              pyhd8ed1ab_0    conda-forge
commonmark                0.9.1                      py_0    conda-forge
coverage                  6.4.4            py38h0a891b7_0    conda-forge
cryptography              37.0.4           py38h2b5fc30_0    conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
dataclasses               0.8                pyhc8e2a94_3    conda-forge
debugpy                   1.6.3            py38hfa26641_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
docutils                  0.17.1           py38h578d9bd_2    conda-forge
dot2tex                   2.11.3             pyhd8ed1ab_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
executing                 1.1.0              pyhd8ed1ab_0    conda-forge
expat                     2.4.9                h27087fc_0    conda-forge
flit-core                 3.7.1              pyhd8ed1ab_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.0               hc2a2eb6_1    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.37.3           py38h0a891b7_0    conda-forge
freetype                  2.12.1               hca18f0e_0    conda-forge
fribidi                   1.0.10               h36c2ea0_0    conda-forge
future                    0.18.2           py38h578d9bd_5    conda-forge
gdk-pixbuf                2.42.8               hff1cb4f_1    conda-forge
gettext                   0.19.8.1          h27087fc_1009    conda-forge
giflib                    5.2.1                h36c2ea0_2    conda-forge
git-lfs                   3.2.0                ha770c72_0    conda-forge
gmp                       6.2.1                h58526e2_0    conda-forge
gmpy2                     2.1.2            py38h8384b0a_0    conda-forge
graphite2                 1.3.13            h58526e2_1001    conda-forge
graphviz                  6.0.1                h5abf519_0    conda-forge
gtk2                      2.24.33              h90689f9_2    conda-forge
gts                       0.7.6                h64030ff_2    conda-forge
h5py                      3.3.0           nompi_py38h9915d05_100    conda-forge
harfbuzz                  5.2.0                hf9f4e7c_0    conda-forge
hdf5                      1.10.6          nompi_h6a2412b_1114    conda-forge
icu                       70.1                 h27087fc_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
imagesize                 1.4.1              pyhd8ed1ab_0    conda-forge
importlib-metadata        4.11.4           py38h578d9bd_0    conda-forge
importlib_metadata        4.11.4               hd8ed1ab_0    conda-forge
importlib_resources       5.9.0              pyhd8ed1ab_0    conda-forge
iniconfig                 1.1.1              pyh9f0ad1d_0    conda-forge
ipykernel                 6.15.3             pyh210e3f2_0    conda-forge
ipython                   8.5.0              pyh41d4057_1    conda-forge
ipython_genutils          0.2.0                      py_1    conda-forge
ipywidgets                8.0.2              pyhd8ed1ab_1    conda-forge
jedi                      0.18.1             pyhd8ed1ab_2    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
jpeg                      9e                   h166bdaf_2    conda-forge
jsonpointer               2.0                        py_0    conda-forge
jsonschema                4.16.0             pyhd8ed1ab_0    conda-forge
jupyter_client            7.3.5              pyhd8ed1ab_0    conda-forge
jupyter_core              4.11.1           py38h578d9bd_0    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        3.0.3              pyhd8ed1ab_0    conda-forge
keyutils                  1.6.1                h166bdaf_0    conda-forge
kiwisolver                1.4.4            py38h43d8883_0    conda-forge
krb5                      1.19.3               h3790be6_0    conda-forge
latexcodec                2.0.1              pyh9f0ad1d_0    conda-forge
lcms2                     2.12                 hddcbb42_0    conda-forge
ld_impl_linux-64          2.36.1               hea4e1c9_2    conda-forge
lerc                      4.0.0                h27087fc_0    conda-forge
libblas                   3.9.0           16_linux64_openblas    conda-forge
libbrotlicommon           1.0.9                h166bdaf_7    conda-forge
libbrotlidec              1.0.9                h166bdaf_7    conda-forge
libbrotlienc              1.0.9                h166bdaf_7    conda-forge
libcblas                  3.9.0           16_linux64_openblas    conda-forge
libcurl                   7.83.1               h7bff187_0    conda-forge
libdeflate                1.14                 h166bdaf_0    conda-forge
libedit                   3.1.20191231         he28a2e2_2    conda-forge
libev                     4.33                 h516909a_1    conda-forge
libffi                    3.4.2                h7f98852_5    conda-forge
libgcc-ng                 12.1.0              h8d9b700_16    conda-forge
libgd                     2.3.3                h18fbbfe_3    conda-forge
libgfortran-ng            12.1.0              h69a702a_16    conda-forge
libgfortran5              12.1.0              hdcd56e2_16    conda-forge
libglib                   2.74.0               h7a41b64_0    conda-forge
libgomp                   12.1.0              h8d9b700_16    conda-forge
libiconv                  1.17                 h166bdaf_0    conda-forge
liblapack                 3.9.0           16_linux64_openblas    conda-forge
libllvm10                 10.0.1               he513fc3_3    conda-forge
libnghttp2                1.47.0               hdcd2b5c_1    conda-forge
libnsl                    2.0.0                h7f98852_0    conda-forge
libopenblas               0.3.21          pthreads_h78a6416_3    conda-forge
libpng                    1.6.38               h753d276_0    conda-forge
librsvg                   2.54.4               h7abd40a_0    conda-forge
libsodium                 1.0.18               h36c2ea0_1    conda-forge
libsqlite                 3.39.3               h753d276_0    conda-forge
libssh2                   1.10.0               haa6b8db_3    conda-forge
libstdcxx-ng              12.1.0              ha89aaad_16    conda-forge
libtiff                   4.4.0                h55922b4_4    conda-forge
libtool                   2.4.6             h9c3ff4c_1008    conda-forge
libuuid                   2.32.1            h7f98852_1000    conda-forge
libwebp                   1.2.4                h522a892_0    conda-forge
libwebp-base              1.2.4                h166bdaf_0    conda-forge
libxcb                    1.13              h7f98852_1004    conda-forge
libxml2                   2.10.2               h4c7fe37_1    conda-forge
libxslt                   1.1.35               h8affb1d_0    conda-forge
libzlib                   1.2.12               h166bdaf_3    conda-forge
llvmlite                  0.36.0           py38h4630a5e_0    conda-forge
lxml                      4.9.1            py38h0a891b7_0    conda-forge
lz4-c                     1.9.3                h9c3ff4c_1    conda-forge
lzo                       2.10              h516909a_1000    conda-forge
markupsafe                2.1.1            py38h0a891b7_1    conda-forge
matplotlib-base           3.5.3            py38h38b5ce0_2    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mistune                   2.0.4              pyhd8ed1ab_0    conda-forge
mock                      4.0.3            py38h578d9bd_3    conda-forge
mpc                       1.2.1                h9f54685_0    conda-forge
mpfr                      4.1.0                h9202a9a_1    conda-forge
mpmath                    1.2.1              pyhd8ed1ab_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mypy_extensions           0.4.3            py38h578d9bd_5    conda-forge
nbclient                  0.6.8              pyhd8ed1ab_0    conda-forge
nbconvert                 7.0.0              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.0.0              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.0.0              pyhd8ed1ab_0    conda-forge
nbformat                  5.6.1              pyhd8ed1ab_0    conda-forge
nbsphinx                  0.8.9              pyhd8ed1ab_0    conda-forge
ncurses                   6.3                  h27087fc_1    conda-forge
nest-asyncio              1.5.5              pyhd8ed1ab_0    conda-forge
networkx                  2.8.6              pyhd8ed1ab_0    conda-forge
nomkl                     1.0                  h5ca1d4c_0    conda-forge
notebook                  6.4.12             pyha770c72_0    conda-forge
numba                     0.53.1           py38h8b71fd7_1    conda-forge
numexpr                   2.8.3           py38h97b1c41_100    conda-forge
numpy                     1.19.5           py38h8246c76_3    conda-forge
numpydoc                  1.4.0              pyhd8ed1ab_1    conda-forge
openjpeg                  2.5.0                h7d73246_1    conda-forge
openssl                   1.1.1q               h166bdaf_0    conda-forge
packaging                 21.3               pyhd8ed1ab_0    conda-forge
pandas                    1.0.5            py38hcb8c335_0    conda-forge
pandoc                    2.19.2               ha770c72_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
pango                     1.50.10              hc4f8a73_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
pathspec                  0.10.1             pyhd8ed1ab_0    conda-forge
pbr                       5.10.0             pyhd8ed1ab_0    conda-forge
pcre2                     10.37                hc3806b6_1    conda-forge
pexpect                   4.8.0              pyh9f0ad1d_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    9.2.0            py38ha3b2c9c_2    conda-forge
pip                       22.2.2             pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h36c2ea0_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_0    conda-forge
platformdirs              2.5.2              pyhd8ed1ab_1    conda-forge
plotly                    5.10.0             pyhd8ed1ab_0    conda-forge
pluggy                    1.0.0            py38h578d9bd_3    conda-forge
prometheus_client         0.14.1             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.31             pyha770c72_0    conda-forge
psutil                    5.9.2            py38h0a891b7_0    conda-forge
pthread-stubs             0.4               h36c2ea0_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
py                        1.11.0             pyh6c4a22f_0    conda-forge
pybtex                    0.24.0             pyhd8ed1ab_2    conda-forge
pybtex-docutils           1.0.2            py38h578d9bd_1    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pyerfa                    2.0.0.1          py38h71d37f0_2    conda-forge
pygments                  2.13.0             pyhd8ed1ab_0    conda-forge
pygraphviz                1.10             py38h64b15e5_1    conda-forge
pyopenssl                 22.0.0             pyhd8ed1ab_1    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pyrsistent                0.18.1           py38h0a891b7_1    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pytables                  3.6.1            py38hc386592_3    conda-forge
pytest                    7.1.3            py38h578d9bd_0    conda-forge
pytest-cov                3.0.0              pyhd8ed1ab_0    conda-forge
pytest-doctestplus        0.12.0             pyhd8ed1ab_0    conda-forge
pytest-html               3.1.1              pyhd8ed1ab_0    conda-forge
pytest-metadata           2.0.2              pyhd8ed1ab_0    conda-forge
python                    3.8.13          h582c2e5_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-dokuwiki           1.3.3              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.16.2             pyhd8ed1ab_0    conda-forge
python_abi                3.8                      2_cp38    conda-forge
pytz                      2022.2.1           pyhd8ed1ab_0    conda-forge
pyyaml                    6.0              py38h0a891b7_4    conda-forge
pyzmq                     24.0.1           py38hfc09fa9_0    conda-forge
radioactivedecay          0.4.15             pyhd8ed1ab_0    conda-forge
readline                  8.1.2                h0f457ee_0    conda-forge
recommonmark              0.7.1              pyhd8ed1ab_0    conda-forge
requests                  2.28.1             pyhd8ed1ab_1    conda-forge
scipy                     1.5.3            py38hb2138dd_0    conda-forge
send2trash                1.8.0              pyhd8ed1ab_0    conda-forge
setuptools                59.8.0           py38h578d9bd_1    conda-forge
setuptools-scm            7.0.5              pyhd8ed1ab_0    conda-forge
setuptools_scm            7.0.5                hd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snakeviz                  2.1.1              pyhd8ed1ab_0    conda-forge
snappy                    1.1.9                hbd366e4_1    conda-forge
snowballstemmer           2.2.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.2.post1        pyhd8ed1ab_0    conda-forge
sphinx                    5.2.1              pyhd8ed1ab_0    conda-forge
sphinx-astropy            1.7.0              pyhd8ed1ab_0    conda-forge
sphinx-automodapi         0.14.1             pyhd8ed1ab_1    conda-forge
sphinx-gallery            0.11.1             pyhd8ed1ab_0    conda-forge
sphinx-jsonschema         1.19.1             pyhd8ed1ab_0    conda-forge
sphinx_bootstrap_theme    0.8.1              pyhd8ed1ab_0    conda-forge
sphinx_rtd_theme          1.0.0              pyhd8ed1ab_0    conda-forge
sphinxcontrib-apidoc      0.3.0                      py_1    conda-forge
sphinxcontrib-applehelp   1.0.2                      py_0    conda-forge
sphinxcontrib-bibtex      2.5.0              pyhd8ed1ab_0    conda-forge
sphinxcontrib-devhelp     1.0.2                      py_0    conda-forge
sphinxcontrib-htmlhelp    2.0.0              pyhd8ed1ab_0    conda-forge
sphinxcontrib-jsmath      1.0.1                      py_0    conda-forge
sphinxcontrib-qthelp      1.0.3                      py_0    conda-forge
sphinxcontrib-serializinghtml 1.1.5              pyhd8ed1ab_2    conda-forge
sqlite                    3.39.3               h4ff8645_0    conda-forge
stack_data                0.5.1              pyhd8ed1ab_0    conda-forge
sympy                     1.10.1           py38h578d9bd_1    conda-forge
tenacity                  8.1.0              pyhd8ed1ab_0    conda-forge
terminado                 0.15.0           py38h578d9bd_0    conda-forge
tinycss2                  1.1.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               h27826a3_0    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tornado                   6.2              py38h0a891b7_0    conda-forge
tqdm                      4.64.1             pyhd8ed1ab_0    conda-forge
traitlets                 5.4.0              pyhd8ed1ab_0    conda-forge
typed-ast                 1.5.4            py38h0a891b7_0    conda-forge
typing-extensions         4.3.0                hd8ed1ab_0    conda-forge
typing_extensions         4.3.0              pyha770c72_0    conda-forge
unicodedata2              14.0.0           py38h0a891b7_1    conda-forge
urllib3                   1.26.11            pyhd8ed1ab_0    conda-forge
wcwidth                   0.2.5              pyh9f0ad1d_2    conda-forge
webencodings              0.5.1                      py_1    conda-forge
wheel                     0.37.1             pyhd8ed1ab_0    conda-forge
widgetsnbextension        4.0.3              pyhd8ed1ab_0    conda-forge
xorg-kbproto              1.0.7             h7f98852_1002    conda-forge
xorg-libice               1.0.10               h7f98852_0    conda-forge
xorg-libsm                1.2.3             hd9c2040_1000    conda-forge
xorg-libx11               1.7.2                h7f98852_0    conda-forge
xorg-libxau               1.0.9                h7f98852_0    conda-forge
xorg-libxdmcp             1.1.3                h7f98852_0    conda-forge
xorg-libxext              1.3.4                h7f98852_1    conda-forge
xorg-libxrender           0.9.10            h7f98852_1003    conda-forge
xorg-renderproto          0.11.1            h7f98852_1002    conda-forge
xorg-xextproto            7.3.0             h7f98852_1002    conda-forge
xorg-xproto               7.0.31            h7f98852_1007    conda-forge
xz                        5.2.6                h166bdaf_0    conda-forge
yaml                      0.2.5                h7f98852_2    conda-forge
zeromq                    4.3.4                h9c3ff4c_1    conda-forge
zipp                      3.8.1              pyhd8ed1ab_0    conda-forge
zlib                      1.2.12               h166bdaf_3    conda-forge
zstd                      1.5.2                h6239696_4    conda-forge```

@timkpaine
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this is specific to conda conda-forge/qgrid-feedstock#18

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