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Issues62 (62)

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pycompression/xopen

Update link to pbzip2 website.

Website for pbzip2 does not exist anymore, now seems to be hosted at: http://compression.great-site.net/pbzip2/ Downloading pbzip2_1.1.13.orig.tar.gz from https://launchpad.net/ubuntu/+source/pbzip2/1.1.13-1build1 ...

• ghuls
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• 1
·
• Opened 
  on Feb 13
·
• #165

pycompression/xopen

Add rapidgzip support?

https://github.com/mxmlnkn/rapidgzip

• y9c
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• 3
·
• Opened 
  on Nov 18, 2024
·
• #164

pycompression/xopen

FR: Support for LZ4?

First of all thank you for such an excellent library which provides our engineering community with simple, transparent, performant, and pythonic library to handle all kinds of compressed and uncompressed ...

• gcflymoto
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• 4
·
• Opened 
  on Sep 12, 2024
·
• #163

pycompression/xopen

Unable to use xopen handle as output of subprocess (`io.UnsupportedOperation: fileno`)

My goal is to run a shell command and stream the output to a compressed file. I figured xopen would be a good way to achieve this, however I can t get it to work. Here is a minimal reproducible example: ...

• victorlin
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• 4
·
• Opened 
  on Jul 24, 2024
·
• #162

pycompression/xopen

xopen.xopen(zst_file): results in OSError: b'/*stdin*\\ : Read error (39) : premature end \n' (exit code 1)

Hi, with xopen/2.0.1 and zstandard/0.22.0 I see the following sometimes when opening a .zst file with xopen.xopen(file_path) as fp: File /usr/pkgs/python3/3.11.1/modules/r2/lib/python3.11/site-packages/xopen/__init__.py ...

• gcflymoto
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• 3
·
• Opened 
  on Jun 4, 2024
·
• #160

pycompression/xopen

2.0.1 release not uploaded to PyPI

The upload was blocked due to this issue: https://status.python.org/incidents/dc9zsqzrs0bv I guess it is a matter of waiting it out and retrying the upload once it is resolved.

• rhpvorderman
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• 1
·
• Opened 
  on Mar 28, 2024
·
• #159

pycompression/xopen

xopen 2.0.0 does not read stdin fully

Originally logged as https://github.com/marcelm/cutadapt/issues/774 but reduced to an xopen only test case by @rhpvorderman : (xopen) rhpvorderman@tuxminator:~/PycharmProjects/xopen$ pip list | grep xopen ...

• peterjc
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• 10
·
• Opened 
  on Mar 27, 2024
·
• #157

pycompression/xopen

xopen does not support .zst file compressed with Zstandard long memory mode

When compressing a file with long memory mode zstd -T4 -9 --force --rm --exclude-compressed --no-progress --long=31 file.txt Xopen cannot decode it python3 -c import xopen; f = xopen.xopen( file.txt.zst ...

• gcflymoto
·
• 10
·
• Opened 
  on Mar 25, 2024
·
• #155

pycompression/xopen

1.9.0 fseek for zstandard file results in io.UnsupportedOperation: underlying stream is not seekable

Can be easily reproduced /nfs/site/home/ user /pyenv3.11.1/bin/python3 Python 3.11.1 (main, Dec 6 2023, 09:00:14) [GCC 12.2.0] on linux Type help , copyright , credits or license for more information. ...

• gcflymoto
·
• 8
·
• Opened 
  on Mar 19, 2024
·
• #153

pycompression/xopen

xopen should support filehandles

This is what gzip.open does for instance: https://github.com/python/cpython/blob/d7334e2c2012defaf7aae920d6a56689464509d1/Lib/gzip.py#L60 I also made sure the threaded libraries do this: https://github.com/pycompression/python-isal/blob/970c141a4976276c8254310474db1038d63000ce/src/isal/igzip_threaded.py#L78 ...

• rhpvorderman
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• 3
·
• Opened 
  on Feb 6, 2024
·
• #149

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