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Linux 2.9.0-alpha1 - compillation failed: libslic3r-arrange.so linker relocation error R_X86_64_TPOFF32 #13694

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mkyral opened this issue Nov 30, 2024 · 5 comments · May be fixed by #13810
Open
2 tasks

Linux 2.9.0-alpha1 - compillation failed: libslic3r-arrange.so linker relocation error R_X86_64_TPOFF32 #13694

mkyral opened this issue Nov 30, 2024 · 5 comments · May be fixed by #13810
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@mkyral
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mkyral commented Nov 30, 2024

Description of the bug

I'm trying to compile latest 2.9.0-alpha1 on my Gentoo and it fails on linker relocation error:

[345/514] : && /usr/bin/x86_64-pc-linux-gnu-g++ -fPIC -march=znver3 -mshstk --param=l1-cache-line-size=64 --param=l1-cache-size=32 --param=l2-cache-size=512 -O2 -pipe -fext-numeric-literals -Wall -Wno-reorder  -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -shared -Wl,-soname,libslic3r-arrange.so -o src/slic3r-arrange/libslic3r-arrange.so src/slic3r-arrange/CMakeFiles/slic3r-arrange.dir/src/Beds.cpp.o src/slic3r-arrange/CMakeFiles/slic3r-arrange.dir/src/NFP/NFP.cpp.o src/slic3r-arrange/CMakeFiles/slic3r-arrange.dir/src/NFP/NFPConcave_Tesselate.cpp.o src/slic3r-arrange/CMakeFiles/slic3r-arrange.dir/src/NFP/EdgeCache.cpp.o  src/libslic3r/liblibslic3r.a  src/libslic3r/liblibslic3r.a  /usr/lib64/libboost_system.so.1.85.0  /usr/lib64/libboost_log.so.1.85.0  /usr/lib64/libboost_filesystem.so.1.85.0  /usr/lib64/libboost_locale.so.1.85.0  /usr/lib64/libboost_thread.so.1.85.0  /usr/lib64/libboost_regex.so.1.85.0  /usr/lib64/libboost_chrono.so.1.85.0  /usr/lib64/libboost_atomic.so.1.85.0  /usr/lib64/libboost_date_time.so.1.85.0  /usr/lib64/libboost_nowide.so.1.85.0  src/clipper/libclipper.a  /usr/lib64/libexpat.so.1.10.0  bundled_deps/glu-libtess/libglu-libtess.a  /usr/lib64/libqhullcpp.a  /usr/lib64/libqhull_r.so.8.0.2  src/libslic3r/liblibslic3r_cgal.a  /usr/lib64/libgmpxx.so  /usr/lib64/libmpfr.so  /usr/lib64/libgmp.so  -ldl  /usr/lib64/libpng.so  /usr/lib64/libjpeg.so  bundled_deps/libqoi.a  bundled_deps/libsemver.a  bundled_deps/admesh/libadmesh.a  bundled_deps/liblocalesutils.a  /usr/local/lib64/libbgcode_convert.a  /usr/local/lib64/libbgcode_binarize.a  /usr/local/lib/libheatshrink_dynalloc.a  /usr/local/lib64/libbgcode_core.a  bundled_deps/miniz/libminiz_static.a  /usr/lib64/libopenvdb.so  /usr/lib64/libz.so  /usr/lib64/libboost_iostreams.so.1.85.0  /usr/lib64/libImath-3_1.so.29.10.0  -lm  /usr/lib64/libtbb.so.12.9  /usr/lib64/libtbbmalloc.so.2.9  /usr/lib64/libnlopt.so && :
FAILED: src/slic3r-arrange/libslic3r-arrange.so
: && /usr/bin/x86_64-pc-linux-gnu-g++ -fPIC -march=znver3 -mshstk --param=l1-cache-line-size=64 --param=l1-cache-size=32 --param=l2-cache-size=512 -O2 -pipe -fext-numeric-literals -Wall -Wno-reorder  -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs -shared -Wl,-soname,libslic3r-arrange.so -o src/slic3r-arrange/libslic3r-arrange.so src/slic3r-arrange/CMakeFiles/slic3r-arrange.dir/src/Beds.cpp.o src/slic3r-arrange/CMakeFiles/slic3r-arrange.dir/src/NFP/NFP.cpp.o src/slic3r-arrange/CMakeFiles/slic3r-arrange.dir/src/NFP/NFPConcave_Tesselate.cpp.o src/slic3r-arrange/CMakeFiles/slic3r-arrange.dir/src/NFP/EdgeCache.cpp.o  src/libslic3r/liblibslic3r.a  src/libslic3r/liblibslic3r.a  /usr/lib64/libboost_system.so.1.85.0  /usr/lib64/libboost_log.so.1.85.0  /usr/lib64/libboost_filesystem.so.1.85.0  /usr/lib64/libboost_locale.so.1.85.0  /usr/lib64/libboost_thread.so.1.85.0  /usr/lib64/libboost_regex.so.1.85.0  /usr/lib64/libboost_chrono.so.1.85.0  /usr/lib64/libboost_atomic.so.1.85.0  /usr/lib64/libboost_date_time.so.1.85.0  /usr/lib64/libboost_nowide.so.1.85.0  src/clipper/libclipper.a  /usr/lib64/libexpat.so.1.10.0  bundled_deps/glu-libtess/libglu-libtess.a  /usr/lib64/libqhullcpp.a  /usr/lib64/libqhull_r.so.8.0.2  src/libslic3r/liblibslic3r_cgal.a  /usr/lib64/libgmpxx.so  /usr/lib64/libmpfr.so  /usr/lib64/libgmp.so  -ldl  /usr/lib64/libpng.so  /usr/lib64/libjpeg.so  bundled_deps/libqoi.a  bundled_deps/libsemver.a  bundled_deps/admesh/libadmesh.a  bundled_deps/liblocalesutils.a  /usr/local/lib64/libbgcode_convert.a  /usr/local/lib64/libbgcode_binarize.a  /usr/local/lib/libheatshrink_dynalloc.a  /usr/local/lib64/libbgcode_core.a  bundled_deps/miniz/libminiz_static.a  /usr/lib64/libopenvdb.so  /usr/lib64/libz.so  /usr/lib64/libboost_iostreams.so.1.85.0  /usr/lib64/libImath-3_1.so.29.10.0  -lm  /usr/lib64/libtbb.so.12.9  /usr/lib64/libtbbmalloc.so.2.9  /usr/lib64/libnlopt.so && :
/usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: src/libslic3r/liblibslic3r_cgal.a(VoronoiUtilsCgal.cpp.o): relocation R_X86_64_TPOFF32 against symbol `_ZGVZN4CGAL4LazyINS_7Point_2INS_16Simple_cartesianINS_11Interval_ntILb0EEEEEEENS1_INS2_I10__gmp_exprIA1_12__mpq_structS9_EEEEENS_19Cartesian_converterISB_S5_NS_12NT_converterISA_S4_EEEEE4zeroEvE1z' can not be used when making a shared object; recompile with -fPIC
/usr/lib/gcc/x86_64-pc-linux-gnu/13/../../../../x86_64-pc-linux-gnu/bin/ld: failed to set dynamic section sizes: bad value
collect2: error: ld returned 1 exit status

Project file & How to reproduce

I bump version in 2.8.1 ebuild and run emerge.

Configure options

-- The C compiler identification is GNU 13.3.1
-- The CXX compiler identification is GNU 13.3.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- SLIC3R_ASAN: OFF
-- SLIC3R_BUILD_SANDBOXES: OFF
-- SLIC3R_BUILD_TESTS: no
-- SLIC3R_ENABLE_FORMAT_STEP: ON
-- SLIC3R_FHS: ON
-- SLIC3R_GTK: 3
-- SLIC3R_GUI: ON
-- SLIC3R_LOG_TO_FILE: OFF
-- SLIC3R_MSVC_COMPILE_PARALLEL: ON
-- SLIC3R_MSVC_PDB: ON
-- SLIC3R_OPENGL_ES: OFF
-- SLIC3R_PCH: OFF
-- SLIC3R_REPO_URL: OFF
-- SLIC3R_STATIC: OFF
-- SLIC3R_UBSAN: OFF
-- SLIC3R_WX_STABLE: ON
-- SLIC3R_STATIC: OFF
-- CMAKE_PREFIX_PATH: (default)
-- Found PkgConfig: /usr/bin/x86_64-pc-linux-gnu-pkg-config (found version "2.3.0")
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Found DBus: /usr/include/dbus-1.0;/usr/lib64/dbus-1.0/include
-- Found Boost: /usr/lib64/cmake/Boost-1.85.0/BoostConfig.cmake (found suitable version "1.85.0", minimum required is "1.66.0") found components: system filesystem thread log locale regex chrono atomic date_time iostreams nowide
-- Found Eigen3: /usr/include/eigen3 (Required is at least version "3.3.7")
-- Boost::boost exists
-- TBB found in /usr/lib64/cmake/TBB
-- Could NOT find CURL (missing: CURL_DIR)
-- Falling back to MODULE search for CURL...
-- Found CURL: /usr/lib64/libcurl.so (found version "8.10.1")
-- Found ZLIB: /usr/lib64/libz.so (found version "1.3.1")
-- EXPAT found in /usr/lib64/cmake/expat-2.6.4
-- Found PNG: /usr/lib64/libpng.so (found version "1.6.44")
-- Found OpenGL: /usr/lib64/libOpenGL.so
-- Could NOT find GLEW (missing: GLEW_DIR)
-- Falling back to MODULE search for GLEW...
-- Found GLEW: /usr/include (found version "2.2.0")
-- Found NLopt in '/usr/lib64'.
-- Using NLopt include directory '/usr/include'.
-- Using NLopt library '/usr/lib64/libnlopt.so'.
COMPONENT = openvdb
-- Found Boost: /usr/lib64/cmake/Boost-1.85.0/BoostConfig.cmake (found version "1.85.0") found components: iostreams
-- Found Blosc: /usr/lib64/libblosc.so (found version "1.21.6")
-- IGL NOT found, using bundled version...
-- Found ZLIB: /usr/lib64/libz.so (found suitable version "1.3.1", minimum required is "1.0")
-- Found Boost: /usr/lib64/cmake/Boost-1.85.0/BoostConfig.cmake (found suitable version "1.85.0", minimum required is "1.78")
-- Using header-only CGAL
-- Targeting Ninja
-- Using /usr/bin/x86_64-pc-linux-gnu-g++ compiler.
-- Found GMP: /usr/lib64/libgmp.so
-- Found MPFR: /usr/lib64/libmpfr.so
-- Found Boost: /usr/lib64/cmake/Boost-1.85.0/BoostConfig.cmake (found suitable version "1.85.0", minimum required is "1.66")
-- Boost include dirs: /usr/include
-- Boost libraries:
-- Using gcc version 4 or later. Adding -frounding-math
-- Found JPEG: /usr/lib64/libjpeg.so (found version "62")
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY
-- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR
-- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success
-- Found wxWidgets: -L/usr/lib64;-pthread;;;-lwx_baseu-3.2-gtk3;-lwx_gtk3u_core-3.2-gtk3;-lwx_gtk3u_html-3.2-gtk3;-lwx_gtk3u_gl-3.2-gtk3;-lwx_gtk3u_webview-3.2-gtk3 (found suitable version "3.2.5", minimum required is "3.2")
-- wx-config path: /usr/lib64/wx/config/gtk3-unicode-3.2-gtk3
-- wx libs: -L/usr/lib64;-pthread;;;-lwx_baseu-3.2-gtk3;-lwx_gtk3u_core-3.2-gtk3;-lwx_gtk3u_html-3.2-gtk3;-lwx_gtk3u_gl-3.2-gtk3;-lwx_gtk3u_webview-3.2-gtk3;/usr/lib64/libpng.so;/usr/lib64/libz.so;/usr/lib64/libjpeg.so;libexpat;/usr/lib64/librt.a
-- Found OpenSSL: /usr/lib64/libcrypto.so (found version "3.3.2")
-- Found GTK3: /usr/include/gtk-3.0;/usr/include/pango-1.0;/usr/include;/usr/include/cairo;/usr/include/gdk-pixbuf-2.0;/usr/include/webp;/usr/include/at-spi2-atk/2.0;/usr/include/at-spi-2.0;/usr/include/atk-1.0;/usr/include/dbus-1.0;/usr/lib64/dbus-1.0/include;/usr/include/elogind;/usr/include/fribidi;/usr/include/libpng16;/usr/include/pixman-1;/usr/include/harfbuzz;/usr/include/freetype2;/usr/include/gio-unix-2.0;/usr/lib64/libffi/include;/usr/include/glib-2.0;/usr/lib64/glib-2.0/include;/usr/include/libmount;/usr/include/blkid
-- Checking for one of the modules 'webkit2gtk-4.0;webkit2gtk-4.1'
-- <<< Gentoo configuration >>>
Build type      Release
Install path    /usr
Compiler flags:
C               -march=znver3 -mshstk --param=l1-cache-line-size=64 --param=l1-cache-size=32 --param=l2-cache-size=512 -O2 -pipe
C++             -march=znver3 -mshstk --param=l1-cache-line-size=64 --param=l1-cache-size=32 --param=l2-cache-size=512 -O2 -pipe -fext-numeric-literals -Wall -Wno-reorder
Linker flags:
Executable      -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs
Module          -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs
Shared          -Wl,-O1 -Wl,--as-needed -Wl,-z,pack-relative-relocs

Checklist of files included above

  • Project file
  • Screenshot

Version of PrusaSlicer

2.9.0_alpha1

Operating system

Gentoo linux

Printer model

Prusa MK4
@Jan-Soustruznik Jan-Soustruznik added the Build Build issues label Dec 2, 2024
@fordfrog
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we have prusaslicer-9999 which applies fpic patch for relevants parts of the code. but that alpha does not run as some libraries are not installed. and the rc is broken too now as we have boost-1.87 with which none of prusaslicer versions we have builds without issues.

@cryptomilk
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I really wonder why PrusaSlicer doesn't set set(CMAKE_POSITION_INDEPENDENT_CODE ON) in src/CMakeLists.txt.

cryptomilk added a commit to cryptomilk/PrusaSlicer that referenced this issue Dec 20, 2024
@cryptomilk
Turn on position independent code for slic3r-arrange
74020af 
Fixes prusa3d#13694
@cryptomilk cryptomilk linked a pull request Dec 20, 2024 that will close this issue
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@cryptomilk
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Just setting it on the slic3r-arrange target will lead to a segfault in the slic3rutils test. I think we really want this turned on for all libraries and binaries.

cryptomilk added a commit to cryptomilk/PrusaSlicer that referenced this issue Dec 20, 2024
@cryptomilk
Turn on position independent code for slic3r-arrange
cdec176 
Fixes prusa3d#13694
cryptomilk added a commit to cryptomilk/PrusaSlicer that referenced this issue Dec 20, 2024
@cryptomilk
cmake: Turn on position independent code for all targets
a48acef 
Fixes: prusa3d#13694
@fordfrog
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i get the same sigsegv even when setting fpic globally

@cryptomilk
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The segfault is something else.

cryptomilk added a commit to cryptomilk/PrusaSlicer that referenced this issue Dec 27, 2024
@cryptomilk
cmake: Turn on position independent code for all targets
d78c416 
Fixes: prusa3d#13694
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Turn on position independent code for slic3r-arrange cryptomilk/PrusaSlicer
4 participants
@mkyral @cryptomilk @fordfrog @Jan-Soustruznik