From 832415c1018ef0814fd332676d9d169d1111315b Mon Sep 17 00:00:00 2001
From: Yevgeny Kazakov <yevgeny.kazakov@uni-ulm.de>
Date: Fri, 17 May 2024 11:59:16 +0200
Subject: [PATCH 1/5] Fix the version of maven-resources-plugin

---
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pom.xml b/pom.xml
index 4e79a3443..764645285 100644
--- a/pom.xml
+++ b/pom.xml
@@ -558,7 +558,7 @@
 							OSGi Framework launcher). -->
 						<plugin>
 							<artifactId>maven-resources-plugin</artifactId>
-							<version>3.9.6</version>
+							<version>3.3.1</version>
 							<executions>
 								<execution>
 									<id>copy-resources</id>

From 13003d0aec32bc81b467f26aaa57628bd6af4faf Mon Sep 17 00:00:00 2001
From: Yevgeny Kazakov <yevgeny.kazakov@uni-ulm.de>
Date: Fri, 17 May 2024 12:01:26 +0200
Subject: [PATCH 2/5] Specify the version of all plugins in the
 pluginManagement section

this should preventing using a wrong plugin version by accident
even if the plugin is not used
---
 pom.xml                    | 69 ++++++++++++++++++++++++++++++--------
 protege-desktop/pom.xml    |  2 --
 protege-editor-owl/pom.xml |  1 -
 3 files changed, 55 insertions(+), 17 deletions(-)

diff --git a/pom.xml b/pom.xml
index 764645285..a97f573f4 100644
--- a/pom.xml
+++ b/pom.xml
@@ -400,6 +400,59 @@
 				   	 <artifactId>maven-surefire-plugin</artifactId>	
 				   	 <version>3.2.5</version>	
 				</plugin>
+				
+				<plugin>
+					<artifactId>maven-resources-plugin</artifactId>
+					<version>3.3.1</version>
+				</plugin>
+				
+				<plugin>
+					<groupId>org.apache.maven.plugins</groupId>
+					<artifactId>maven-source-plugin</artifactId>
+					<version>3.3.0</version>
+				</plugin>	
+				
+				<plugin>
+					<groupId>org.apache.maven.plugins</groupId>
+					<artifactId>maven-dependency-plugin</artifactId>
+					<version>3.6.1</version>
+				</plugin>				
+				
+				<plugin>
+					<groupId>org.apache.maven.plugins</groupId>
+					<artifactId>maven-javadoc-plugin</artifactId>
+					<version>3.6.3</version>
+				</plugin>			
+				
+				<plugin>
+					<groupId>org.apache.maven.plugins</groupId>
+					<artifactId>maven-gpg-plugin</artifactId>
+					<version>3.1.0</version>
+				</plugin>
+				
+				<plugin>
+					<groupId>org.sonatype.plugins</groupId>
+					<artifactId>nexus-staging-maven-plugin</artifactId>
+					<version>1.6.13</version>
+				</plugin>
+				
+				<plugin>
+					<groupId>org.apache.maven.plugins</groupId>
+					<artifactId>maven-clean-plugin</artifactId>
+					<version>2.5</version>
+				</plugin>
+
+				<plugin>
+					<groupId>org.apache.maven.plugins</groupId>
+					<artifactId>maven-antrun-plugin</artifactId>
+					<version>3.1.0</version>
+				</plugin>
+				
+				<plugin>
+					<groupId>org.apache.maven.plugins</groupId>
+	                <artifactId>maven-failsafe-plugin</artifactId>
+	                <version>3.2.5</version>
+                </plugin>
 
 			</plugins>
 		</pluginManagement>
@@ -417,7 +470,6 @@
 					<plugin>
 						<groupId>org.apache.maven.plugins</groupId>
 						<artifactId>maven-source-plugin</artifactId>
-						<version>3.3.0</version>
 						<executions>
 							<execution>
 								<id>attach-sources</id>
@@ -431,7 +483,6 @@
 					<plugin>
 						<groupId>org.apache.maven.plugins</groupId>
 						<artifactId>maven-javadoc-plugin</artifactId>
-						<version>3.6.3</version>
 						<executions>
 							<execution>
 								<id>attach-javadocs</id>
@@ -449,7 +500,6 @@
 					<plugin>
 						<groupId>org.apache.maven.plugins</groupId>
 						<artifactId>maven-gpg-plugin</artifactId>
-						<version>3.1.0</version>
 						<executions>
 							<execution>
 								<id>sign-artifacts</id>
@@ -463,8 +513,7 @@
 
 					<plugin>
 						<groupId>org.sonatype.plugins</groupId>
-						<artifactId>nexus-staging-maven-plugin</artifactId>
-						<version>1.6.13</version>
+						<artifactId>nexus-staging-maven-plugin</artifactId>						
 						<extensions>true</extensions>
 						<executions>
 							<execution>
@@ -494,11 +543,6 @@
 			<build>
 				<pluginManagement>
 					<plugins>
-						<!-- Including this plug-in eliminates the "maven-dependency-plugin 
-							(goals "copy-dependencies", "unpack") is not supported by m2e" Eclipse error. -->
-						<!-- See stackoverflow for full discussion: http://stackoverflow.com/q/8706017. -->
-						<!-- This plugin's configuration is used to store Eclipse m2e settings 
-							only. It has no influence on the Maven build itself. -->
 						<plugin>
 							<groupId>org.eclipse.m2e</groupId>
 							<artifactId>lifecycle-mapping</artifactId>
@@ -538,8 +582,7 @@
 							in Eclipse (PDE + m2e + OSGi Framework launcher). -->
 						<plugin>
 							<groupId>org.apache.maven.plugins</groupId>
-							<artifactId>maven-dependency-plugin</artifactId>
-							<version>3.6.1</version>
+							<artifactId>maven-dependency-plugin</artifactId>							
 							<executions>
 								<execution>
 									<id>copy-provided-dependencies</id>
@@ -558,7 +601,6 @@
 							OSGi Framework launcher). -->
 						<plugin>
 							<artifactId>maven-resources-plugin</artifactId>
-							<version>3.3.1</version>
 							<executions>
 								<execution>
 									<id>copy-resources</id>
@@ -585,7 +627,6 @@
 						<plugin>
 							<groupId>org.apache.maven.plugins</groupId>
 							<artifactId>maven-clean-plugin</artifactId>
-							<version>2.5</version>
 							<configuration>
 								<filesets>
 									<fileset>
diff --git a/protege-desktop/pom.xml b/protege-desktop/pom.xml
index cb809916f..3bec9f129 100644
--- a/protege-desktop/pom.xml
+++ b/protege-desktop/pom.xml
@@ -133,7 +133,6 @@
 					<plugin>
 						<groupId>org.apache.maven.plugins</groupId>
 						<artifactId>maven-antrun-plugin</artifactId>
-						<version>3.1.0</version>
 						<executions>
 							<execution>
 								<phase>compile</phase>
@@ -151,7 +150,6 @@
 
 					<plugin>
 						<artifactId>maven-assembly-plugin</artifactId>
-						<version>3.6.0</version>
 						<executions>
 							<execution>
 								<id>protege-desktop-assembly</id>
diff --git a/protege-editor-owl/pom.xml b/protege-editor-owl/pom.xml
index eecef0f2c..afb79ca12 100644
--- a/protege-editor-owl/pom.xml
+++ b/protege-editor-owl/pom.xml
@@ -236,7 +236,6 @@
             <plugin>
                 <groupId>org.apache.maven.plugins</groupId>
                 <artifactId>maven-failsafe-plugin</artifactId>
-                <version>3.2.5</version>
                 <executions>
                     <execution>
                         <phase>verify</phase>

From 3f9b75ef22d4a1c4f42d55422079df266e73b8e8 Mon Sep 17 00:00:00 2001
From: Yevgeny Kazakov <yevgeny.kazakov@uni-ulm.de>
Date: Fri, 17 May 2024 12:05:05 +0200
Subject: [PATCH 3/5] The m2e livecycle-mapping for maven-bundle-pluginis no
 longer needed

Looks like m2e supports maven-bundle-plugin
---
 pom.xml | 24 ------------------------
 1 file changed, 24 deletions(-)

diff --git a/pom.xml b/pom.xml
index a97f573f4..b3fce7b36 100644
--- a/pom.xml
+++ b/pom.xml
@@ -543,30 +543,6 @@
 			<build>
 				<pluginManagement>
 					<plugins>
-						<plugin>
-							<groupId>org.eclipse.m2e</groupId>
-							<artifactId>lifecycle-mapping</artifactId>
-							<version>1.0.0</version>
-							<configuration>
-								<lifecycleMappingMetadata>
-									<pluginExecutions>
-										<pluginExecution>
-											<pluginExecutionFilter>
-												<groupId>org.apache.maven.plugins</groupId>
-												<artifactId>maven-dependency-plugin</artifactId>
-												<versionRange>[3.1,)</versionRange>
-												<goals>
-													<goal>copy-dependencies</goal>
-												</goals>
-											</pluginExecutionFilter>
-											<action>
-												<ignore />
-											</action>
-										</pluginExecution>
-									</pluginExecutions>
-								</lifecycleMappingMetadata>
-							</configuration>
-						</plugin>
 						<plugin>
 							<groupId>org.apache.felix</groupId>
 							<artifactId>maven-bundle-plugin</artifactId>

From 998e5a07276ed1034be5586d143001428a1ce498 Mon Sep 17 00:00:00 2001
From: Yevgeny Kazakov <yevgeny.kazakov@uni-ulm.de>
Date: Fri, 17 May 2024 12:28:25 +0200
Subject: [PATCH 4/5] Specify minimal maven version

to make builds more reproducible
---
 pom.xml | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/pom.xml b/pom.xml
index b3fce7b36..411a09921 100644
--- a/pom.xml
+++ b/pom.xml
@@ -345,6 +345,11 @@
 	<build>
 		<pluginManagement>
 			<plugins>
+				<plugin>
+					<artifactId>maven-enforcer-plugin</artifactId>
+					<version>3.4.1</version>
+				</plugin>
+				
 				<plugin>
 					<groupId>org.apache.maven.plugins</groupId>
 					<artifactId>maven-compiler-plugin</artifactId>
@@ -456,6 +461,27 @@
 
 			</plugins>
 		</pluginManagement>
+
+		<plugins>
+			<plugin>
+				<artifactId>maven-enforcer-plugin</artifactId>
+				<executions>
+					<execution>
+						<id>enforce-maven</id>
+						<goals>
+							<goal>enforce</goal>
+						</goals>
+						<configuration>
+							<rules>
+								<requireMavenVersion>
+									<version>3.6.3</version>
+								</requireMavenVersion>
+							</rules>
+						</configuration>
+					</execution>
+				</executions>
+			</plugin>
+		</plugins>
 	</build>
 	
 	<!-- Generate source and Javadoc JAR files, and sign artifacts.  Required by Sonatype OSSRH for deployment. -->

From f7a0e50cad0ec27f569197e25974c35f8d98065e Mon Sep 17 00:00:00 2001
From: Yevgeny Kazakov <yevgeny.kazakov@uni-ulm.de>
Date: Fri, 17 May 2024 13:02:31 +0200
Subject: [PATCH 5/5] Bump plugin versions

except for maven-bundle-plugin, for which the new versions do not work
---
 pom.xml | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pom.xml b/pom.xml
index 411a09921..246145bcb 100644
--- a/pom.xml
+++ b/pom.xml
@@ -353,7 +353,7 @@
 				<plugin>
 					<groupId>org.apache.maven.plugins</groupId>
 					<artifactId>maven-compiler-plugin</artifactId>
-					<version>3.8.0</version>
+					<version>3.13.0</version>
 					<configuration>
 						<release>11</release>
 					</configuration>
@@ -414,7 +414,7 @@
 				<plugin>
 					<groupId>org.apache.maven.plugins</groupId>
 					<artifactId>maven-source-plugin</artifactId>
-					<version>3.3.0</version>
+					<version>3.3.1</version>
 				</plugin>	
 				
 				<plugin>
@@ -432,7 +432,7 @@
 				<plugin>
 					<groupId>org.apache.maven.plugins</groupId>
 					<artifactId>maven-gpg-plugin</artifactId>
-					<version>3.1.0</version>
+					<version>3.2.4</version>
 				</plugin>
 				
 				<plugin>
@@ -444,7 +444,7 @@
 				<plugin>
 					<groupId>org.apache.maven.plugins</groupId>
 					<artifactId>maven-clean-plugin</artifactId>
-					<version>2.5</version>
+					<version>3.3.2</version>
 				</plugin>
 
 				<plugin>