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About the INFO value in Quality Control of GWAS summary statistics #509

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koujiaodahan opened this issue Jul 25, 2024 · 2 comments
Open

About the INFO value in Quality Control of GWAS summary statistics #509

koujiaodahan opened this issue Jul 25, 2024 · 2 comments

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@koujiaodahan
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We run the gwas based on our WGS dataset ,so no imputation ,no INFO value. So is there no need to run the Quality Control of GWAS summary statistics?
@privefl
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privefl commented Jul 25, 2024

Are you talking about the QC comparing the two estimates of SD?
Yes, it is always good to check for potential errors. You can also compare AFs between your GWAS dataset and the LD reference.

@privefl
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privefl commented Aug 2, 2024

Any update on this?

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@privefl @koujiaodahan