From cd54f1e01e7bac83d362078e24121feada6d8003 Mon Sep 17 00:00:00 2001 From: Manuel Lera Ramirez Date: Tue, 12 Dec 2023 11:53:56 +0000 Subject: [PATCH] updated gtf genome file with pombase-2023-12-02 version, mentioned in https://github.com/pombase/allele_qc/issues/108#issuecomment-1851860755 --- data/pombe_genome.gtf | 174 ++++++++++++++++++++++-------------------- 1 file changed, 90 insertions(+), 84 deletions(-) diff --git a/data/pombe_genome.gtf b/data/pombe_genome.gtf index 2127182..4bb003a 100644 --- a/data/pombe_genome.gtf +++ b/data/pombe_genome.gtf @@ -1042,8 +1042,8 @@ I PomBase exon 301588 301796 . - . transcript_id "SPAC18B11.10.1"; gene_id "SPAC I PomBase CDS 299628 301263 . - 1 transcript_id "SPAC18B11.10.1"; gene_id "SPAC18B11.10"; I PomBase CDS 301436 301520 . - 2 transcript_id "SPAC18B11.10.1"; gene_id "SPAC18B11.10"; I PomBase CDS 301588 301711 . - 0 transcript_id "SPAC18B11.10.1"; gene_id "SPAC18B11.10"; -I PomBase gene 299464 299610 . + . gene_id "SPNCRNA.27"; gene_biotype "protein_coding"; -I PomBase transcript 299464 299610 . + . transcript_id "SPNCRNA.27.1"; gene_id "SPNCRNA.27"; transcript_biotype "protein_coding"; +I PomBase gene 299464 299610 . + . gene_id "SPNCRNA.27"; gene_biotype "ncRNA"; +I PomBase transcript 299464 299610 . + . transcript_id "SPNCRNA.27.1"; gene_id "SPNCRNA.27"; transcript_biotype "ncRNA"; I PomBase exon 299464 299610 . + 0 transcript_id "SPNCRNA.27.1"; gene_id "SPNCRNA.27"; I PomBase gene 300354 300616 . + . gene_id "SPNCRNA.2118"; gene_biotype "ncRNA"; I PomBase transcript 300354 300616 . + . transcript_id "SPNCRNA.2118.1"; gene_id "SPNCRNA.2118"; transcript_biotype "ncRNA"; @@ -2716,12 +2716,11 @@ I PomBase transcript 682361 682659 . + . transcript_id "SPNCRNA.2291.1"; gene_id I PomBase exon 682361 682659 . + 0 transcript_id "SPNCRNA.2291.1"; gene_id "SPNCRNA.2291"; I PomBase gene 682763 683660 . + . gene_id "SPAC22F3.11c"; gene_biotype "protein_coding"; I PomBase transcript 682763 683660 . + . transcript_id "SPAC22F3.11c.1"; gene_id "SPAC22F3.11c"; transcript_biotype "protein_coding"; -I PomBase exon 682763 682996 . + . transcript_id "SPAC22F3.11c.1"; gene_id "SPAC22F3.11c"; -I PomBase exon 682998 683109 . + . transcript_id "SPAC22F3.11c.1"; gene_id "SPAC22F3.11c"; +I PomBase exon 682763 683109 . + . transcript_id "SPAC22F3.11c.1"; gene_id "SPAC22F3.11c"; I PomBase exon 683160 683660 . + . transcript_id "SPAC22F3.11c.1"; gene_id "SPAC22F3.11c"; I PomBase CDS 682874 682996 . + 0 transcript_id "SPAC22F3.11c.1"; gene_id "SPAC22F3.11c"; -I PomBase CDS 682998 683109 . + 0 transcript_id "SPAC22F3.11c.1"; gene_id "SPAC22F3.11c"; -I PomBase CDS 683160 683446 . + 2 transcript_id "SPAC22F3.11c.1"; gene_id "SPAC22F3.11c"; +I PomBase CDS 682995 683109 . + 0 transcript_id "SPAC22F3.11c.1"; gene_id "SPAC22F3.11c"; +I PomBase CDS 683160 683446 . + 0 transcript_id "SPAC22F3.11c.1"; gene_id "SPAC22F3.11c"; I PomBase gene 682837 683436 . - . gene_id "SPNCRNA.2292"; gene_biotype "ncRNA"; I PomBase transcript 682837 683436 . - . transcript_id "SPNCRNA.2292.1"; gene_id "SPNCRNA.2292"; transcript_biotype "ncRNA"; I PomBase exon 682837 683436 . - 0 transcript_id "SPNCRNA.2292.1"; gene_id "SPNCRNA.2292"; @@ -8349,8 +8348,8 @@ I PomBase CDS 1965173 1965294 . + 0 transcript_id "SPAC3H1.13.1"; gene_id "SPAC3 I PomBase CDS 1965334 1965803 . + 1 transcript_id "SPAC3H1.13.1"; gene_id "SPAC3H1.13"; I PomBase CDS 1965845 1966050 . + 2 transcript_id "SPAC3H1.13.1"; gene_id "SPAC3H1.13"; I PomBase CDS 1966102 1966338 . + 0 transcript_id "SPAC3H1.13.1"; gene_id "SPAC3H1.13"; -I PomBase gene 1966483 1966635 . - . gene_id "SPNCRNA.530"; gene_biotype "protein_coding"; -I PomBase transcript 1966483 1966635 . - . transcript_id "SPNCRNA.530.1"; gene_id "SPNCRNA.530"; transcript_biotype "protein_coding"; +I PomBase gene 1966483 1966635 . - . gene_id "SPNCRNA.530"; gene_biotype "ncRNA"; +I PomBase transcript 1966483 1966635 . - . transcript_id "SPNCRNA.530.1"; gene_id "SPNCRNA.530"; transcript_biotype "ncRNA"; I PomBase exon 1966483 1966635 . - 0 transcript_id "SPNCRNA.530.1"; gene_id "SPNCRNA.530"; I PomBase gene 1966817 1967969 . + . gene_id "SPAC3H1.14"; gene_biotype "protein_coding"; I PomBase transcript 1966817 1967969 . + . transcript_id "SPAC3H1.14.1"; gene_id "SPAC3H1.14"; transcript_biotype "protein_coding"; @@ -8686,8 +8685,8 @@ I PomBase exon 2040860 2041295 . - . transcript_id "SPAC607.03c.1"; gene_id "SPA I PomBase exon 2041446 2041524 . - . transcript_id "SPAC607.03c.1"; gene_id "SPAC607.03c"; I PomBase CDS 2040936 2041295 . - 0 transcript_id "SPAC607.03c.1"; gene_id "SPAC607.03c"; I PomBase CDS 2041446 2041463 . - 0 transcript_id "SPAC607.03c.1"; gene_id "SPAC607.03c"; -I PomBase gene 2041681 2041861 . + . gene_id "SPNCRNA.185"; gene_biotype "protein_coding"; -I PomBase transcript 2041681 2041861 . + . transcript_id "SPNCRNA.185.1"; gene_id "SPNCRNA.185"; transcript_biotype "protein_coding"; +I PomBase gene 2041681 2041861 . + . gene_id "SPNCRNA.185"; gene_biotype "ncRNA"; +I PomBase transcript 2041681 2041861 . + . transcript_id "SPNCRNA.185.1"; gene_id "SPNCRNA.185"; transcript_biotype "ncRNA"; I PomBase exon 2041681 2041861 . + 0 transcript_id "SPNCRNA.185.1"; gene_id "SPNCRNA.185"; I PomBase gene 2042356 2043361 . - . gene_id "SPNCRNA.789"; gene_biotype "ncRNA"; I PomBase transcript 2042356 2043361 . - . transcript_id "SPNCRNA.789.1"; gene_id "SPNCRNA.789"; transcript_biotype "ncRNA"; @@ -10596,8 +10595,8 @@ I PomBase CDS 2472861 2472902 . - 0 transcript_id "SPAC19A8.16.1"; gene_id "SPAC I PomBase gene 2473029 2473992 . + . gene_id "SPNCRNA.3111"; gene_biotype "ncRNA"; I PomBase transcript 2473029 2473992 . + . transcript_id "SPNCRNA.3111.1"; gene_id "SPNCRNA.3111"; transcript_biotype "ncRNA"; I PomBase exon 2473029 2473992 . + 0 transcript_id "SPNCRNA.3111.1"; gene_id "SPNCRNA.3111"; -I PomBase gene 2474084 2474170 . + . gene_id "SPNCRNA.286"; gene_biotype "protein_coding"; -I PomBase transcript 2474084 2474170 . + . transcript_id "SPNCRNA.286.1"; gene_id "SPNCRNA.286"; transcript_biotype "protein_coding"; +I PomBase gene 2474084 2474170 . + . gene_id "SPNCRNA.286"; gene_biotype "ncRNA"; +I PomBase transcript 2474084 2474170 . + . transcript_id "SPNCRNA.286.1"; gene_id "SPNCRNA.286"; transcript_biotype "ncRNA"; I PomBase exon 2474084 2474170 . + 0 transcript_id "SPNCRNA.286.1"; gene_id "SPNCRNA.286"; I PomBase gene 2474657 2475765 . + . gene_id "SPAC19A8.07c"; gene_biotype "protein_coding"; I PomBase transcript 2474657 2475765 . + . transcript_id "SPAC19A8.07c.1"; gene_id "SPAC19A8.07c"; transcript_biotype "protein_coding"; @@ -11512,8 +11511,8 @@ I PomBase CDS 2693436 2693529 . - 0 transcript_id "SPAC644.11c.1"; gene_id "SPAC I PomBase gene 2693065 2693300 . + . gene_id "SPNCRNA.3210"; gene_biotype "ncRNA"; I PomBase transcript 2693065 2693300 . + . transcript_id "SPNCRNA.3210.1"; gene_id "SPNCRNA.3210"; transcript_biotype "ncRNA"; I PomBase exon 2693065 2693300 . + 0 transcript_id "SPNCRNA.3210.1"; gene_id "SPNCRNA.3210"; -I PomBase gene 2694347 2694522 . + . gene_id "SPNCRNA.202"; gene_biotype "protein_coding"; -I PomBase transcript 2694347 2694522 . + . transcript_id "SPNCRNA.202.1"; gene_id "SPNCRNA.202"; transcript_biotype "protein_coding"; +I PomBase gene 2694347 2694522 . + . gene_id "SPNCRNA.202"; gene_biotype "ncRNA"; +I PomBase transcript 2694347 2694522 . + . transcript_id "SPNCRNA.202.1"; gene_id "SPNCRNA.202"; transcript_biotype "ncRNA"; I PomBase exon 2694347 2694522 . + 0 transcript_id "SPNCRNA.202.1"; gene_id "SPNCRNA.202"; I PomBase gene 2694657 2694893 . - . gene_id "SPNCRNA.3211"; gene_biotype "ncRNA"; I PomBase transcript 2694657 2694893 . - . transcript_id "SPNCRNA.3211.1"; gene_id "SPNCRNA.3211"; transcript_biotype "ncRNA"; @@ -11562,8 +11561,8 @@ I PomBase exon 2701617 2701653 . + . transcript_id "SPAC644.16.1"; gene_id "SPAC I PomBase exon 2701694 2703006 . + . transcript_id "SPAC644.16.1"; gene_id "SPAC644.16"; I PomBase CDS 2701629 2701653 . + 0 transcript_id "SPAC644.16.1"; gene_id "SPAC644.16"; I PomBase CDS 2701694 2702937 . + 2 transcript_id "SPAC644.16.1"; gene_id "SPAC644.16"; -I PomBase gene 2703965 2704030 . + . gene_id "SPNCRNA.198"; gene_biotype "protein_coding"; -I PomBase transcript 2703965 2704030 . + . transcript_id "SPNCRNA.198.1"; gene_id "SPNCRNA.198"; transcript_biotype "protein_coding"; +I PomBase gene 2703965 2704030 . + . gene_id "SPNCRNA.198"; gene_biotype "ncRNA"; +I PomBase transcript 2703965 2704030 . + . transcript_id "SPNCRNA.198.1"; gene_id "SPNCRNA.198"; transcript_biotype "ncRNA"; I PomBase exon 2703965 2704030 . + 0 transcript_id "SPNCRNA.198.1"; gene_id "SPNCRNA.198"; I PomBase gene 2704213 2705627 . - . gene_id "SPAC644.18c"; gene_biotype "protein_coding"; I PomBase transcript 2704213 2705627 . - . transcript_id "SPAC644.18c.1"; gene_id "SPAC644.18c"; transcript_biotype "protein_coding"; @@ -12797,8 +12796,8 @@ I PomBase CDS 2999850 3000968 . - 0 transcript_id "SPAC31G5.09c.1"; gene_id "SPA I PomBase gene 3001750 3004335 . - . gene_id "SPNCRNA.872"; gene_biotype "ncRNA"; I PomBase transcript 3001750 3004335 . - . transcript_id "SPNCRNA.872.1"; gene_id "SPNCRNA.872"; transcript_biotype "ncRNA"; I PomBase exon 3001750 3004335 . - 0 transcript_id "SPNCRNA.872.1"; gene_id "SPNCRNA.872"; -I PomBase gene 3001761 3001930 . + . gene_id "SPNCRNA.71"; gene_biotype "protein_coding"; -I PomBase transcript 3001761 3001930 . + . transcript_id "SPNCRNA.71.1"; gene_id "SPNCRNA.71"; transcript_biotype "protein_coding"; +I PomBase gene 3001761 3001930 . + . gene_id "SPNCRNA.71"; gene_biotype "ncRNA"; +I PomBase transcript 3001761 3001930 . + . transcript_id "SPNCRNA.71.1"; gene_id "SPNCRNA.71"; transcript_biotype "ncRNA"; I PomBase exon 3001761 3001930 . + 0 transcript_id "SPNCRNA.71.1"; gene_id "SPNCRNA.71"; I PomBase gene 3002057 3004916 . + . gene_id "SPAC31G5.10"; gene_biotype "protein_coding"; I PomBase transcript 3002057 3004916 . + . transcript_id "SPAC31G5.10.1"; gene_id "SPAC31G5.10"; transcript_biotype "protein_coding"; @@ -13098,8 +13097,8 @@ I PomBase exon 3076127 3076371 . - 0 transcript_id "SPNCRNA.3378.1"; gene_id "SP I PomBase gene 3076495 3076807 . - . gene_id "SPNCRNA.3379"; gene_biotype "ncRNA"; I PomBase transcript 3076495 3076807 . - . transcript_id "SPNCRNA.3379.1"; gene_id "SPNCRNA.3379"; transcript_biotype "ncRNA"; I PomBase exon 3076495 3076807 . - 0 transcript_id "SPNCRNA.3379.1"; gene_id "SPNCRNA.3379"; -I PomBase gene 3076914 3077076 . + . gene_id "SPNCRNA.213"; gene_biotype "protein_coding"; -I PomBase transcript 3076914 3077076 . + . transcript_id "SPNCRNA.213.1"; gene_id "SPNCRNA.213"; transcript_biotype "protein_coding"; +I PomBase gene 3076914 3077076 . + . gene_id "SPNCRNA.213"; gene_biotype "ncRNA"; +I PomBase transcript 3076914 3077076 . + . transcript_id "SPNCRNA.213.1"; gene_id "SPNCRNA.213"; transcript_biotype "ncRNA"; I PomBase exon 3076914 3077076 . + 0 transcript_id "SPNCRNA.213.1"; gene_id "SPNCRNA.213"; I PomBase gene 3077190 3080590 . + . gene_id "SPAC16A10.01"; gene_biotype "protein_coding"; I PomBase transcript 3077190 3080590 . + . transcript_id "SPAC16A10.01.1"; gene_id "SPAC16A10.01"; transcript_biotype "protein_coding"; @@ -15883,8 +15882,8 @@ I PomBase exon 3735561 3735713 . - . transcript_id "SPAP7G5.02c.1"; gene_id "SPA I PomBase CDS 3733737 3735276 . - 1 transcript_id "SPAP7G5.02c.1"; gene_id "SPAP7G5.02c"; I PomBase CDS 3735477 3735517 . - 0 transcript_id "SPAP7G5.02c.1"; gene_id "SPAP7G5.02c"; I PomBase CDS 3735561 3735599 . - 0 transcript_id "SPAP7G5.02c.1"; gene_id "SPAP7G5.02c"; -I PomBase gene 3735863 3735954 . + . gene_id "SPNCRNA.524"; gene_biotype "protein_coding"; -I PomBase transcript 3735863 3735954 . + . transcript_id "SPNCRNA.524.1"; gene_id "SPNCRNA.524"; transcript_biotype "protein_coding"; +I PomBase gene 3735863 3735954 . + . gene_id "SPNCRNA.524"; gene_biotype "ncRNA"; +I PomBase transcript 3735863 3735954 . + . transcript_id "SPNCRNA.524.1"; gene_id "SPNCRNA.524"; transcript_biotype "ncRNA"; I PomBase exon 3735863 3735954 . + 0 transcript_id "SPNCRNA.524.1"; gene_id "SPNCRNA.524"; I PomBase gene 3736520 3736592 . + . gene_id "SPATRNAARG.02"; gene_biotype "tRNA"; I PomBase transcript 3736520 3736592 . + . transcript_id "SPATRNAARG.02.1"; gene_id "SPATRNAARG.02"; transcript_biotype "tRNA"; @@ -21369,8 +21368,8 @@ I PomBase exon 5022786 5023175 . - . transcript_id "SPAC22E12.03c.1"; gene_id "S I PomBase exon 5023274 5023851 . - . transcript_id "SPAC22E12.03c.1"; gene_id "SPAC22E12.03c"; I PomBase CDS 5023079 5023175 . - 1 transcript_id "SPAC22E12.03c.1"; gene_id "SPAC22E12.03c"; I PomBase CDS 5023274 5023752 . - 0 transcript_id "SPAC22E12.03c.1"; gene_id "SPAC22E12.03c"; -I PomBase gene 5023945 5024116 . + . gene_id "SPNCRNA.52"; gene_biotype "protein_coding"; -I PomBase transcript 5023945 5024116 . + . transcript_id "SPNCRNA.52.1"; gene_id "SPNCRNA.52"; transcript_biotype "protein_coding"; +I PomBase gene 5023945 5024116 . + . gene_id "SPNCRNA.52"; gene_biotype "ncRNA"; +I PomBase transcript 5023945 5024116 . + . transcript_id "SPNCRNA.52.1"; gene_id "SPNCRNA.52"; transcript_biotype "ncRNA"; I PomBase exon 5023945 5024116 . + 0 transcript_id "SPNCRNA.52.1"; gene_id "SPNCRNA.52"; I PomBase gene 5024473 5025936 . - . gene_id "SPNCRNA.4258"; gene_biotype "ncRNA"; I PomBase transcript 5024473 5025936 . - . transcript_id "SPNCRNA.4258.1"; gene_id "SPNCRNA.4258"; transcript_biotype "ncRNA"; @@ -21983,8 +21982,8 @@ I PomBase CDS 5170883 5171848 . - 0 transcript_id "SPAC26F1.07.1"; gene_id "SPAC I PomBase gene 5172050 5173481 . - . gene_id "SPNCRNA.1055"; gene_biotype "ncRNA"; I PomBase transcript 5172050 5173481 . - . transcript_id "SPNCRNA.1055.1"; gene_id "SPNCRNA.1055"; transcript_biotype "ncRNA"; I PomBase exon 5172050 5173481 . - 0 transcript_id "SPNCRNA.1055.1"; gene_id "SPNCRNA.1055"; -I PomBase gene 5172196 5172341 . + . gene_id "SPNCRNA.90"; gene_biotype "protein_coding"; -I PomBase transcript 5172196 5172341 . + . transcript_id "SPNCRNA.90.1"; gene_id "SPNCRNA.90"; transcript_biotype "protein_coding"; +I PomBase gene 5172196 5172341 . + . gene_id "SPNCRNA.90"; gene_biotype "ncRNA"; +I PomBase transcript 5172196 5172341 . + . transcript_id "SPNCRNA.90.1"; gene_id "SPNCRNA.90"; transcript_biotype "ncRNA"; I PomBase exon 5172196 5172341 . + 0 transcript_id "SPNCRNA.90.1"; gene_id "SPNCRNA.90"; I PomBase gene 5173512 5173868 . + . gene_id "SPNCRNA.4334"; gene_biotype "ncRNA"; I PomBase transcript 5173512 5173868 . + . transcript_id "SPNCRNA.4334.1"; gene_id "SPNCRNA.4334"; transcript_biotype "ncRNA"; @@ -22518,8 +22517,8 @@ I PomBase CDS 5315814 5316491 . - 0 transcript_id "SPAP8A3.02c.1"; gene_id "SPAP I PomBase gene 5315770 5317020 . + . gene_id "SPNCRNA.1070"; gene_biotype "ncRNA"; I PomBase transcript 5315770 5317020 . + . transcript_id "SPNCRNA.1070.1"; gene_id "SPNCRNA.1070"; transcript_biotype "ncRNA"; I PomBase exon 5315770 5317020 . + 0 transcript_id "SPNCRNA.1070.1"; gene_id "SPNCRNA.1070"; -I PomBase gene 5317424 5317575 . - . gene_id "SPNCRNA.1714"; gene_biotype "protein_coding"; -I PomBase transcript 5317424 5317575 . - . transcript_id "SPNCRNA.1714.1"; gene_id "SPNCRNA.1714"; transcript_biotype "protein_coding"; +I PomBase gene 5317424 5317575 . - . gene_id "SPNCRNA.1714"; gene_biotype "ncRNA"; +I PomBase transcript 5317424 5317575 . - . transcript_id "SPNCRNA.1714.1"; gene_id "SPNCRNA.1714"; transcript_biotype "ncRNA"; I PomBase exon 5317424 5317575 . - 0 transcript_id "SPNCRNA.1714.1"; gene_id "SPNCRNA.1714"; I PomBase gene 5317840 5318150 . - . gene_id "SPNCRNA.4392"; gene_biotype "ncRNA"; I PomBase transcript 5317840 5318150 . - . transcript_id "SPNCRNA.4392.1"; gene_id "SPNCRNA.4392"; transcript_biotype "ncRNA"; @@ -23096,8 +23095,8 @@ I PomBase exon 5443153 5443495 . - 0 transcript_id "SPNCRNA.4452.1"; gene_id "SP I PomBase gene 5443994 5447919 . - . gene_id "SPNCRNA.4453"; gene_biotype "ncRNA"; I PomBase transcript 5443994 5447919 . - . transcript_id "SPNCRNA.4453.1"; gene_id "SPNCRNA.4453"; transcript_biotype "ncRNA"; I PomBase exon 5443994 5447919 . - 0 transcript_id "SPNCRNA.4453.1"; gene_id "SPNCRNA.4453"; -I PomBase gene 5444019 5444123 . + . gene_id "SPNCRNA.273"; gene_biotype "protein_coding"; -I PomBase transcript 5444019 5444123 . + . transcript_id "SPNCRNA.273.1"; gene_id "SPNCRNA.273"; transcript_biotype "protein_coding"; +I PomBase gene 5444019 5444123 . + . gene_id "SPNCRNA.273"; gene_biotype "ncRNA"; +I PomBase transcript 5444019 5444123 . + . transcript_id "SPNCRNA.273.1"; gene_id "SPNCRNA.273"; transcript_biotype "ncRNA"; I PomBase exon 5444019 5444123 . + 0 transcript_id "SPNCRNA.273.1"; gene_id "SPNCRNA.273"; I PomBase gene 5444851 5447537 . + . gene_id "SPAC1039.01"; gene_biotype "protein_coding"; I PomBase transcript 5444851 5447537 . + . transcript_id "SPAC1039.01.1"; gene_id "SPAC1039.01"; transcript_biotype "protein_coding"; @@ -23624,8 +23623,8 @@ II PomBase exon 26155 26355 . - . transcript_id "SPBC1348.10c.1"; gene_id "SPBC1 II PomBase exon 26420 28372 . - . transcript_id "SPBC1348.10c.1"; gene_id "SPBC1348.10c"; II PomBase CDS 26287 26355 . - 0 transcript_id "SPBC1348.10c.1"; gene_id "SPBC1348.10c"; II PomBase CDS 26420 28372 . - 0 transcript_id "SPBC1348.10c.1"; gene_id "SPBC1348.10c"; -II PomBase gene 28624 28796 . + . gene_id "SPNCRNA.11"; gene_biotype "protein_coding"; -II PomBase transcript 28624 28796 . + . transcript_id "SPNCRNA.11.1"; gene_id "SPNCRNA.11"; transcript_biotype "protein_coding"; +II PomBase gene 28624 28796 . + . gene_id "SPNCRNA.11"; gene_biotype "ncRNA"; +II PomBase transcript 28624 28796 . + . transcript_id "SPNCRNA.11.1"; gene_id "SPNCRNA.11"; transcript_biotype "ncRNA"; II PomBase exon 28624 28796 . + 0 transcript_id "SPNCRNA.11.1"; gene_id "SPNCRNA.11"; II PomBase gene 29015 29432 . + . gene_id "SPNCRNA.4525"; gene_biotype "ncRNA"; II PomBase transcript 29015 29432 . + . transcript_id "SPNCRNA.4525.1"; gene_id "SPNCRNA.4525"; transcript_biotype "ncRNA"; @@ -25499,8 +25498,8 @@ II PomBase CDS 484573 486960 . - 0 transcript_id "SPBC902.02c.1"; gene_id "SPBC9 II PomBase gene 486017 487048 . + . gene_id "SPNCRNA.4736"; gene_biotype "ncRNA"; II PomBase transcript 486017 487048 . + . transcript_id "SPNCRNA.4736.1"; gene_id "SPNCRNA.4736"; transcript_biotype "ncRNA"; II PomBase exon 486017 487048 . + 0 transcript_id "SPNCRNA.4736.1"; gene_id "SPNCRNA.4736"; -II PomBase gene 487382 487504 . + . gene_id "SPNCRNA.307"; gene_biotype "protein_coding"; -II PomBase transcript 487382 487504 . + . transcript_id "SPNCRNA.307.1"; gene_id "SPNCRNA.307"; transcript_biotype "protein_coding"; +II PomBase gene 487382 487504 . + . gene_id "SPNCRNA.307"; gene_biotype "ncRNA"; +II PomBase transcript 487382 487504 . + . transcript_id "SPNCRNA.307.1"; gene_id "SPNCRNA.307"; transcript_biotype "ncRNA"; II PomBase exon 487382 487504 . + 0 transcript_id "SPNCRNA.307.1"; gene_id "SPNCRNA.307"; II PomBase gene 487956 489600 . + . gene_id "SPBC902.03"; gene_biotype "protein_coding"; II PomBase transcript 487956 489600 . + . transcript_id "SPBC902.03.1"; gene_id "SPBC902.03"; transcript_biotype "protein_coding"; @@ -30084,8 +30083,8 @@ II PomBase exon 1540969 1541500 . + 0 transcript_id "SPNCRNA.5234.1"; gene_id "S II PomBase gene 1541452 1541811 . - . gene_id "SPBC83.19c"; gene_biotype "protein_coding"; II PomBase transcript 1541452 1541811 . - . transcript_id "SPBC83.19c.1"; gene_id "SPBC83.19c"; transcript_biotype "protein_coding"; II PomBase CDS 1541452 1541811 . - 0 transcript_id "SPBC83.19c.1"; gene_id "SPBC83.19c"; -II PomBase gene 1542196 1542364 . + . gene_id "SPNCRNA.352"; gene_biotype "protein_coding"; -II PomBase transcript 1542196 1542364 . + . transcript_id "SPNCRNA.352.1"; gene_id "SPNCRNA.352"; transcript_biotype "protein_coding"; +II PomBase gene 1542196 1542364 . + . gene_id "SPNCRNA.352"; gene_biotype "ncRNA"; +II PomBase transcript 1542196 1542364 . + . transcript_id "SPNCRNA.352.1"; gene_id "SPNCRNA.352"; transcript_biotype "ncRNA"; II PomBase exon 1542196 1542364 . + 0 transcript_id "SPNCRNA.352.1"; gene_id "SPNCRNA.352"; II PomBase gene 1542564 1543222 . + . gene_id "SPBC83.17"; gene_biotype "protein_coding"; II PomBase transcript 1542564 1543222 . + . transcript_id "SPBC83.17.1"; gene_id "SPBC83.17"; transcript_biotype "protein_coding"; @@ -30366,8 +30365,8 @@ II PomBase exon 1609945 1612731 . - 0 transcript_id "SPNCRNA.5257.1"; gene_id "S II PomBase gene 1611106 1612940 . + . gene_id "SPNCRNA.362"; gene_biotype "ncRNA"; II PomBase transcript 1611106 1612940 . + . transcript_id "SPNCRNA.362.1"; gene_id "SPNCRNA.362"; transcript_biotype "ncRNA"; II PomBase exon 1611106 1612940 . + 0 transcript_id "SPNCRNA.362.1"; gene_id "SPNCRNA.362"; -II PomBase gene 1613127 1613220 . + . gene_id "SPNCRNA.363"; gene_biotype "protein_coding"; -II PomBase transcript 1613127 1613220 . + . transcript_id "SPNCRNA.363.1"; gene_id "SPNCRNA.363"; transcript_biotype "protein_coding"; +II PomBase gene 1613127 1613220 . + . gene_id "SPNCRNA.363"; gene_biotype "ncRNA"; +II PomBase transcript 1613127 1613220 . + . transcript_id "SPNCRNA.363.1"; gene_id "SPNCRNA.363"; transcript_biotype "ncRNA"; II PomBase exon 1613127 1613220 . + 0 transcript_id "SPNCRNA.363.1"; gene_id "SPNCRNA.363"; II PomBase gene 1613277 1614347 . + . gene_id "SPNCRNA.364"; gene_biotype "ncRNA"; II PomBase transcript 1613277 1614347 . + . transcript_id "SPNCRNA.364.1"; gene_id "SPNCRNA.364"; transcript_biotype "ncRNA"; @@ -30412,8 +30411,8 @@ II PomBase exon 1619340 1619803 . + 0 transcript_id "SPNCRNA.367.1"; gene_id "SP II PomBase gene 1619808 1620391 . + . gene_id "SPNCRNA.368"; gene_biotype "ncRNA"; II PomBase transcript 1619808 1620391 . + . transcript_id "SPNCRNA.368.1"; gene_id "SPNCRNA.368"; transcript_biotype "ncRNA"; II PomBase exon 1619808 1620391 . + 0 transcript_id "SPNCRNA.368.1"; gene_id "SPNCRNA.368"; -II PomBase gene 1620799 1620937 . + . gene_id "SPNCRNA.369"; gene_biotype "protein_coding"; -II PomBase transcript 1620799 1620937 . + . transcript_id "SPNCRNA.369.1"; gene_id "SPNCRNA.369"; transcript_biotype "protein_coding"; +II PomBase gene 1620799 1620937 . + . gene_id "SPNCRNA.369"; gene_biotype "ncRNA"; +II PomBase transcript 1620799 1620937 . + . transcript_id "SPNCRNA.369.1"; gene_id "SPNCRNA.369"; transcript_biotype "ncRNA"; II PomBase exon 1620799 1620937 . + 0 transcript_id "SPNCRNA.369.1"; gene_id "SPNCRNA.369"; II PomBase gene 1625750 1626227 . + . gene_id "SPNCRNA.370"; gene_biotype "ncRNA"; II PomBase transcript 1625750 1626227 . + . transcript_id "SPNCRNA.370.1"; gene_id "SPNCRNA.370"; transcript_biotype "ncRNA"; @@ -30984,8 +30983,8 @@ II PomBase exon 1747595 1747846 . + 0 transcript_id "SPNCRNA.5336.1"; gene_id "S II PomBase gene 1747878 1748109 . - . gene_id "SPNCRNA.5337"; gene_biotype "ncRNA"; II PomBase transcript 1747878 1748109 . - . transcript_id "SPNCRNA.5337.1"; gene_id "SPNCRNA.5337"; transcript_biotype "ncRNA"; II PomBase exon 1747878 1748109 . - 0 transcript_id "SPNCRNA.5337.1"; gene_id "SPNCRNA.5337"; -II PomBase gene 1749534 1749589 . + . gene_id "SPNCRNA.116"; gene_biotype "protein_coding"; -II PomBase transcript 1749534 1749589 . + . transcript_id "SPNCRNA.116.1"; gene_id "SPNCRNA.116"; transcript_biotype "protein_coding"; +II PomBase gene 1749534 1749589 . + . gene_id "SPNCRNA.116"; gene_biotype "ncRNA"; +II PomBase transcript 1749534 1749589 . + . transcript_id "SPNCRNA.116.1"; gene_id "SPNCRNA.116"; transcript_biotype "ncRNA"; II PomBase exon 1749534 1749589 . + 0 transcript_id "SPNCRNA.116.1"; gene_id "SPNCRNA.116"; II PomBase gene 1749626 1751043 . - . gene_id "SPNCRNA.1460"; gene_biotype "ncRNA"; II PomBase transcript 1749626 1751043 . - . transcript_id "SPNCRNA.1460.1"; gene_id "SPNCRNA.1460"; transcript_biotype "ncRNA"; @@ -32614,8 +32613,8 @@ II PomBase exon 2134981 2136530 . + 0 transcript_id "SPNCRNA.390.1"; gene_id "SP II PomBase gene 2135797 2136563 . - . gene_id "SPNCRNA.5507"; gene_biotype "ncRNA"; II PomBase transcript 2135797 2136563 . - . transcript_id "SPNCRNA.5507.1"; gene_id "SPNCRNA.5507"; transcript_biotype "ncRNA"; II PomBase exon 2135797 2136563 . - 0 transcript_id "SPNCRNA.5507.1"; gene_id "SPNCRNA.5507"; -II PomBase gene 2137042 2137124 . + . gene_id "SPNCRNA.391"; gene_biotype "protein_coding"; -II PomBase transcript 2137042 2137124 . + . transcript_id "SPNCRNA.391.1"; gene_id "SPNCRNA.391"; transcript_biotype "protein_coding"; +II PomBase gene 2137042 2137124 . + . gene_id "SPNCRNA.391"; gene_biotype "ncRNA"; +II PomBase transcript 2137042 2137124 . + . transcript_id "SPNCRNA.391.1"; gene_id "SPNCRNA.391"; transcript_biotype "ncRNA"; II PomBase exon 2137042 2137124 . + 0 transcript_id "SPNCRNA.391.1"; gene_id "SPNCRNA.391"; II PomBase gene 2137529 2139540 . - . gene_id "SPNCRNA.1489"; gene_biotype "ncRNA"; II PomBase transcript 2137529 2139540 . - . transcript_id "SPNCRNA.1489.1"; gene_id "SPNCRNA.1489"; transcript_biotype "ncRNA"; @@ -34146,8 +34145,8 @@ II PomBase exon 2470942 2471662 . - 0 transcript_id "SPNCRNA.5676.1"; gene_id "S II PomBase gene 2471721 2472056 . - . gene_id "SPBC12C2.14c"; gene_biotype "protein_coding"; II PomBase transcript 2471721 2472056 . - . transcript_id "SPBC12C2.14c.1"; gene_id "SPBC12C2.14c"; transcript_biotype "protein_coding"; II PomBase CDS 2471721 2472056 . - 0 transcript_id "SPBC12C2.14c.1"; gene_id "SPBC12C2.14c"; -II PomBase gene 2472439 2472537 . + . gene_id "SPNCRNA.397"; gene_biotype "protein_coding"; -II PomBase transcript 2472439 2472537 . + . transcript_id "SPNCRNA.397.1"; gene_id "SPNCRNA.397"; transcript_biotype "protein_coding"; +II PomBase gene 2472439 2472537 . + . gene_id "SPNCRNA.397"; gene_biotype "ncRNA"; +II PomBase transcript 2472439 2472537 . + . transcript_id "SPNCRNA.397.1"; gene_id "SPNCRNA.397"; transcript_biotype "ncRNA"; II PomBase exon 2472439 2472537 . + 0 transcript_id "SPNCRNA.397.1"; gene_id "SPNCRNA.397"; II PomBase gene 2472619 2475322 . - . gene_id "SPNCRNA.5677"; gene_biotype "ncRNA"; II PomBase transcript 2472619 2475322 . - . transcript_id "SPNCRNA.5677.1"; gene_id "SPNCRNA.5677"; transcript_biotype "ncRNA"; @@ -35418,6 +35417,10 @@ II PomBase CDS 2772884 2773046 . + 0 transcript_id "SPBC685.02.1"; gene_id "SPBC II PomBase CDS 2773102 2773166 . + 2 transcript_id "SPBC685.02.1"; gene_id "SPBC685.02"; II PomBase CDS 2773317 2774093 . + 0 transcript_id "SPBC685.02.1"; gene_id "SPBC685.02"; II PomBase CDS 2774223 2774447 . + 0 transcript_id "SPBC685.02.1"; gene_id "SPBC685.02"; +II PomBase transcript 2773110 2774447 . + . transcript_id "SPBC685.02.2"; gene_id "SPBC685.02"; transcript_biotype "protein_coding"; +II PomBase CDS 2773110 2773166 . + 0 transcript_id "SPBC685.02.2"; gene_id "SPBC685.02"; +II PomBase CDS 2773317 2774093 . + 0 transcript_id "SPBC685.02.2"; gene_id "SPBC685.02"; +II PomBase CDS 2774223 2774447 . + 0 transcript_id "SPBC685.02.2"; gene_id "SPBC685.02"; II PomBase gene 2774320 2775741 . - . gene_id "SPNCRNA.5813"; gene_biotype "ncRNA"; II PomBase transcript 2774320 2775741 . - . transcript_id "SPNCRNA.5813.1"; gene_id "SPNCRNA.5813"; transcript_biotype "ncRNA"; II PomBase exon 2774320 2775741 . - 0 transcript_id "SPNCRNA.5813.1"; gene_id "SPNCRNA.5813"; @@ -35627,8 +35630,8 @@ II PomBase exon 2817505 2818029 . - 0 transcript_id "SPNCRNA.5830.1"; gene_id "S II PomBase gene 2818637 2818875 . - . gene_id "SPNCRNA.5831"; gene_biotype "ncRNA"; II PomBase transcript 2818637 2818875 . - . transcript_id "SPNCRNA.5831.1"; gene_id "SPNCRNA.5831"; transcript_biotype "ncRNA"; II PomBase exon 2818637 2818875 . - 0 transcript_id "SPNCRNA.5831.1"; gene_id "SPNCRNA.5831"; -II PomBase gene 2819557 2819634 . + . gene_id "SPNCRNA.408"; gene_biotype "protein_coding"; -II PomBase transcript 2819557 2819634 . + . transcript_id "SPNCRNA.408.1"; gene_id "SPNCRNA.408"; transcript_biotype "protein_coding"; +II PomBase gene 2819557 2819634 . + . gene_id "SPNCRNA.408"; gene_biotype "ncRNA"; +II PomBase transcript 2819557 2819634 . + . transcript_id "SPNCRNA.408.1"; gene_id "SPNCRNA.408"; transcript_biotype "ncRNA"; II PomBase exon 2819557 2819634 . + 0 transcript_id "SPNCRNA.408.1"; gene_id "SPNCRNA.408"; II PomBase gene 2819802 2825220 . + . gene_id "SPBC19C7.03"; gene_biotype "protein_coding"; II PomBase transcript 2819802 2825220 . + . transcript_id "SPBC19C7.03.1"; gene_id "SPBC19C7.03"; transcript_biotype "protein_coding"; @@ -36406,8 +36409,8 @@ II PomBase CDS 2982764 2983681 . - 0 transcript_id "SPBC2D10.10c.1"; gene_id "SP II PomBase gene 2983879 2984259 . - . gene_id "SPNCRNA.5923"; gene_biotype "ncRNA"; II PomBase transcript 2983879 2984259 . - . transcript_id "SPNCRNA.5923.1"; gene_id "SPNCRNA.5923"; transcript_biotype "ncRNA"; II PomBase exon 2983879 2984259 . - 0 transcript_id "SPNCRNA.5923.1"; gene_id "SPNCRNA.5923"; -II PomBase gene 2983907 2983962 . + . gene_id "SPNCRNA.118"; gene_biotype "protein_coding"; -II PomBase transcript 2983907 2983962 . + . transcript_id "SPNCRNA.118.1"; gene_id "SPNCRNA.118"; transcript_biotype "protein_coding"; +II PomBase gene 2983907 2983962 . + . gene_id "SPNCRNA.118"; gene_biotype "ncRNA"; +II PomBase transcript 2983907 2983962 . + . transcript_id "SPNCRNA.118.1"; gene_id "SPNCRNA.118"; transcript_biotype "ncRNA"; II PomBase exon 2983907 2983962 . + 0 transcript_id "SPNCRNA.118.1"; gene_id "SPNCRNA.118"; II PomBase gene 2984507 2985899 . - . gene_id "SPBC2D10.11c"; gene_biotype "protein_coding"; II PomBase transcript 2984507 2985899 . - . transcript_id "SPBC2D10.11c.1"; gene_id "SPBC2D10.11c"; transcript_biotype "protein_coding"; @@ -37130,8 +37133,8 @@ II PomBase CDS 3150758 3151999 . + 0 transcript_id "SPBC405.06.1"; gene_id "SPBC II PomBase gene 3153171 3153905 . - . gene_id "SPNCRNA.5990"; gene_biotype "ncRNA"; II PomBase transcript 3153171 3153905 . - . transcript_id "SPNCRNA.5990.1"; gene_id "SPNCRNA.5990"; transcript_biotype "ncRNA"; II PomBase exon 3153171 3153905 . - 0 transcript_id "SPNCRNA.5990.1"; gene_id "SPNCRNA.5990"; -II PomBase gene 3153261 3153382 . + . gene_id "SPNCRNA.414"; gene_biotype "protein_coding"; -II PomBase transcript 3153261 3153382 . + . transcript_id "SPNCRNA.414.1"; gene_id "SPNCRNA.414"; transcript_biotype "protein_coding"; +II PomBase gene 3153261 3153382 . + . gene_id "SPNCRNA.414"; gene_biotype "ncRNA"; +II PomBase transcript 3153261 3153382 . + . transcript_id "SPNCRNA.414.1"; gene_id "SPNCRNA.414"; transcript_biotype "ncRNA"; II PomBase exon 3153261 3153382 . + 0 transcript_id "SPNCRNA.414.1"; gene_id "SPNCRNA.414"; II PomBase gene 3153488 3154041 . + . gene_id "SPBC405.07"; gene_biotype "protein_coding"; II PomBase transcript 3153488 3154041 . + . transcript_id "SPBC405.07.1"; gene_id "SPBC405.07"; transcript_biotype "protein_coding"; @@ -38273,8 +38276,8 @@ II PomBase exon 3378387 3378722 . + 0 transcript_id "SPNCRNA.6102.1"; gene_id "S II PomBase gene 3379312 3381141 . - . gene_id "SPNCRNA.1595"; gene_biotype "ncRNA"; II PomBase transcript 3379312 3381141 . - . transcript_id "SPNCRNA.1595.1"; gene_id "SPNCRNA.1595"; transcript_biotype "ncRNA"; II PomBase exon 3379312 3381141 . - 0 transcript_id "SPNCRNA.1595.1"; gene_id "SPNCRNA.1595"; -II PomBase gene 3379891 3379982 . + . gene_id "SPNCRNA.115"; gene_biotype "protein_coding"; -II PomBase transcript 3379891 3379982 . + . transcript_id "SPNCRNA.115.1"; gene_id "SPNCRNA.115"; transcript_biotype "protein_coding"; +II PomBase gene 3379891 3379982 . + . gene_id "SPNCRNA.115"; gene_biotype "ncRNA"; +II PomBase transcript 3379891 3379982 . + . transcript_id "SPNCRNA.115.1"; gene_id "SPNCRNA.115"; transcript_biotype "ncRNA"; II PomBase exon 3379891 3379982 . + 0 transcript_id "SPNCRNA.115.1"; gene_id "SPNCRNA.115"; II PomBase gene 3381212 3383137 . + . gene_id "SPBC3B8.07c"; gene_biotype "protein_coding"; II PomBase transcript 3381212 3383137 . + . transcript_id "SPBC3B8.07c.1"; gene_id "SPBC3B8.07c"; transcript_biotype "protein_coding"; @@ -39070,8 +39073,8 @@ II PomBase exon 3553485 3553921 . + 0 transcript_id "SPNCRNA.6178.1"; gene_id "S II PomBase gene 3554093 3555636 . + . gene_id "SPNCRNA.6179"; gene_biotype "ncRNA"; II PomBase transcript 3554093 3555636 . + . transcript_id "SPNCRNA.6179.1"; gene_id "SPNCRNA.6179"; transcript_biotype "ncRNA"; II PomBase exon 3554093 3555636 . + 0 transcript_id "SPNCRNA.6179.1"; gene_id "SPNCRNA.6179"; -II PomBase gene 3555918 3556114 . + . gene_id "SPNCRNA.423"; gene_biotype "protein_coding"; -II PomBase transcript 3555918 3556114 . + . transcript_id "SPNCRNA.423.1"; gene_id "SPNCRNA.423"; transcript_biotype "protein_coding"; +II PomBase gene 3555918 3556114 . + . gene_id "SPNCRNA.423"; gene_biotype "ncRNA"; +II PomBase transcript 3555918 3556114 . + . transcript_id "SPNCRNA.423.1"; gene_id "SPNCRNA.423"; transcript_biotype "ncRNA"; II PomBase exon 3555918 3556114 . + 0 transcript_id "SPNCRNA.423.1"; gene_id "SPNCRNA.423"; II PomBase gene 3556020 3556437 . - . gene_id "SPNCRNA.6180"; gene_biotype "ncRNA"; II PomBase transcript 3556020 3556437 . - . transcript_id "SPNCRNA.6180.1"; gene_id "SPNCRNA.6180"; transcript_biotype "ncRNA"; @@ -39742,10 +39745,13 @@ II PomBase CDS 3721755 3722930 . + 0 transcript_id "SPBC25D12.04.1"; gene_id "SP II PomBase gene 3723373 3723867 . - . gene_id "SPNCRNA.6252"; gene_biotype "ncRNA"; II PomBase transcript 3723373 3723867 . - . transcript_id "SPNCRNA.6252.1"; gene_id "SPNCRNA.6252"; transcript_biotype "ncRNA"; II PomBase exon 3723373 3723867 . - 0 transcript_id "SPNCRNA.6252.1"; gene_id "SPNCRNA.6252"; -II PomBase gene 3723433 3725138 . + . gene_id "SPBC25D12.05"; gene_biotype "protein_coding"; -II PomBase transcript 3723433 3725138 . + . transcript_id "SPBC25D12.05.1"; gene_id "SPBC25D12.05"; transcript_biotype "protein_coding"; -II PomBase exon 3723433 3725138 . + . transcript_id "SPBC25D12.05.1"; gene_id "SPBC25D12.05"; -II PomBase CDS 3723455 3725029 . + 0 transcript_id "SPBC25D12.05.1"; gene_id "SPBC25D12.05"; +II PomBase gene 3723383 3725138 . + . gene_id "SPBC25D12.05"; gene_biotype "protein_coding"; +II PomBase transcript 3723383 3725138 . + . transcript_id "SPBC25D12.05.1"; gene_id "SPBC25D12.05"; transcript_biotype "protein_coding"; +II PomBase exon 3723383 3725138 . + . transcript_id "SPBC25D12.05.1"; gene_id "SPBC25D12.05"; +II PomBase CDS 3723383 3725029 . + 0 transcript_id "SPBC25D12.05.1"; gene_id "SPBC25D12.05"; +II PomBase transcript 3723433 3725138 . + . transcript_id "SPBC25D12.05.2"; gene_id "SPBC25D12.05"; transcript_biotype "protein_coding"; +II PomBase exon 3723433 3725138 . + . transcript_id "SPBC25D12.05.2"; gene_id "SPBC25D12.05"; +II PomBase CDS 3723455 3725029 . + 0 transcript_id "SPBC25D12.05.2"; gene_id "SPBC25D12.05"; II PomBase gene 3723985 3724277 . - . gene_id "SPNCRNA.6253"; gene_biotype "ncRNA"; II PomBase transcript 3723985 3724277 . - . transcript_id "SPNCRNA.6253.1"; gene_id "SPNCRNA.6253"; transcript_biotype "ncRNA"; II PomBase exon 3723985 3724277 . - 0 transcript_id "SPNCRNA.6253.1"; gene_id "SPNCRNA.6253"; @@ -43317,8 +43323,8 @@ III PomBase CDS 47741 48475 . - 0 transcript_id "SPCC757.03c.1"; gene_id "SPCC75 III PomBase gene 47513 48882 . + . gene_id "SPNCRNA.1100"; gene_biotype "ncRNA"; III PomBase transcript 47513 48882 . + . transcript_id "SPNCRNA.1100.1"; gene_id "SPNCRNA.1100"; transcript_biotype "ncRNA"; III PomBase exon 47513 48882 . + 0 transcript_id "SPNCRNA.1100.1"; gene_id "SPNCRNA.1100"; -III PomBase gene 49076 49156 . + . gene_id "SPNCRNA.450"; gene_biotype "protein_coding"; -III PomBase transcript 49076 49156 . + . transcript_id "SPNCRNA.450.1"; gene_id "SPNCRNA.450"; transcript_biotype "protein_coding"; +III PomBase gene 49076 49156 . + . gene_id "SPNCRNA.450"; gene_biotype "ncRNA"; +III PomBase transcript 49076 49156 . + . transcript_id "SPNCRNA.450.1"; gene_id "SPNCRNA.450"; transcript_biotype "ncRNA"; III PomBase exon 49076 49156 . + 0 transcript_id "SPNCRNA.450.1"; gene_id "SPNCRNA.450"; III PomBase gene 49366 49718 . - . gene_id "SPNCRNA.6685"; gene_biotype "ncRNA"; III PomBase transcript 49366 49718 . - . transcript_id "SPNCRNA.6685.1"; gene_id "SPNCRNA.6685"; transcript_biotype "ncRNA"; @@ -43604,8 +43610,8 @@ III PomBase exon 118970 119962 . - 0 transcript_id "SPNCRNA.1110.1"; gene_id "SP III PomBase gene 119206 120139 . + . gene_id "SPNCRNA.1111"; gene_biotype "ncRNA"; III PomBase transcript 119206 120139 . + . transcript_id "SPNCRNA.1111.1"; gene_id "SPNCRNA.1111"; transcript_biotype "ncRNA"; III PomBase exon 119206 120139 . + 0 transcript_id "SPNCRNA.1111.1"; gene_id "SPNCRNA.1111"; -III PomBase gene 120113 120204 . + . gene_id "SPNCRNA.455"; gene_biotype "protein_coding"; -III PomBase transcript 120113 120204 . + . transcript_id "SPNCRNA.455.1"; gene_id "SPNCRNA.455"; transcript_biotype "protein_coding"; +III PomBase gene 120113 120204 . + . gene_id "SPNCRNA.455"; gene_biotype "ncRNA"; +III PomBase transcript 120113 120204 . + . transcript_id "SPNCRNA.455.1"; gene_id "SPNCRNA.455"; transcript_biotype "ncRNA"; III PomBase exon 120113 120204 . + 0 transcript_id "SPNCRNA.455.1"; gene_id "SPNCRNA.455"; III PomBase gene 120121 120374 . - . gene_id "SPNCRNA.6708"; gene_biotype "ncRNA"; III PomBase transcript 120121 120374 . - . transcript_id "SPNCRNA.6708.1"; gene_id "SPNCRNA.6708"; transcript_biotype "ncRNA"; @@ -44062,8 +44068,8 @@ III PomBase CDS 225323 225643 . - 0 transcript_id "SPCC548.05c.1"; gene_id "SPCC III PomBase gene 225924 226185 . - . gene_id "SPNCRNA.6751"; gene_biotype "ncRNA"; III PomBase transcript 225924 226185 . - . transcript_id "SPNCRNA.6751.1"; gene_id "SPNCRNA.6751"; transcript_biotype "ncRNA"; III PomBase exon 225924 226185 . - 0 transcript_id "SPNCRNA.6751.1"; gene_id "SPNCRNA.6751"; -III PomBase gene 226130 226215 . + . gene_id "SPNCRNA.460"; gene_biotype "protein_coding"; -III PomBase transcript 226130 226215 . + . transcript_id "SPNCRNA.460.1"; gene_id "SPNCRNA.460"; transcript_biotype "protein_coding"; +III PomBase gene 226130 226215 . + . gene_id "SPNCRNA.460"; gene_biotype "ncRNA"; +III PomBase transcript 226130 226215 . + . transcript_id "SPNCRNA.460.1"; gene_id "SPNCRNA.460"; transcript_biotype "ncRNA"; III PomBase exon 226130 226215 . + 0 transcript_id "SPNCRNA.460.1"; gene_id "SPNCRNA.460"; III PomBase gene 226336 228845 . - . gene_id "SPCC548.06c"; gene_biotype "protein_coding"; III PomBase transcript 226336 228845 . - . transcript_id "SPCC548.06c.1"; gene_id "SPCC548.06c"; transcript_biotype "protein_coding"; @@ -44471,11 +44477,11 @@ III PomBase exon 332008 332546 . + 0 transcript_id "SPNCRNA.1131.1"; gene_id "SP III PomBase gene 332696 334245 . - . gene_id "SPNCRNA.6799"; gene_biotype "ncRNA"; III PomBase transcript 332696 334245 . - . transcript_id "SPNCRNA.6799.1"; gene_id "SPNCRNA.6799"; transcript_biotype "ncRNA"; III PomBase exon 332696 334245 . - 0 transcript_id "SPNCRNA.6799.1"; gene_id "SPNCRNA.6799"; -III PomBase gene 332801 332905 . + . gene_id "SPNCRNA.463"; gene_biotype "protein_coding"; -III PomBase transcript 332801 332905 . + . transcript_id "SPNCRNA.463.1"; gene_id "SPNCRNA.463"; transcript_biotype "protein_coding"; +III PomBase gene 332801 332905 . + . gene_id "SPNCRNA.463"; gene_biotype "ncRNA"; +III PomBase transcript 332801 332905 . + . transcript_id "SPNCRNA.463.1"; gene_id "SPNCRNA.463"; transcript_biotype "ncRNA"; III PomBase exon 332801 332905 . + 0 transcript_id "SPNCRNA.463.1"; gene_id "SPNCRNA.463"; -III PomBase gene 333503 333624 . + . gene_id "SPNCRNA.464"; gene_biotype "protein_coding"; -III PomBase transcript 333503 333624 . + . transcript_id "SPNCRNA.464.1"; gene_id "SPNCRNA.464"; transcript_biotype "protein_coding"; +III PomBase gene 333503 333624 . + . gene_id "SPNCRNA.464"; gene_biotype "ncRNA"; +III PomBase transcript 333503 333624 . + . transcript_id "SPNCRNA.464.1"; gene_id "SPNCRNA.464"; transcript_biotype "ncRNA"; III PomBase exon 333503 333624 . + 0 transcript_id "SPNCRNA.464.1"; gene_id "SPNCRNA.464"; III PomBase gene 334079 337070 . + . gene_id "SPCC736.11"; gene_biotype "protein_coding"; III PomBase transcript 334079 337070 . + . transcript_id "SPCC736.11.1"; gene_id "SPCC736.11"; transcript_biotype "protein_coding"; @@ -47071,11 +47077,11 @@ III PomBase exon 926108 926294 . + 0 transcript_id "SPRRNA.26.1"; gene_id "SPRRN III PomBase gene 926408 926689 . - . gene_id "SPNCRNA.7111"; gene_biotype "ncRNA"; III PomBase transcript 926408 926689 . - . transcript_id "SPNCRNA.7111.1"; gene_id "SPNCRNA.7111"; transcript_biotype "ncRNA"; III PomBase exon 926408 926689 . - 0 transcript_id "SPNCRNA.7111.1"; gene_id "SPNCRNA.7111"; -III PomBase gene 926437 926624 . + . gene_id "SPNCRNA.475"; gene_biotype "protein_coding"; -III PomBase transcript 926437 926624 . + . transcript_id "SPNCRNA.475.1"; gene_id "SPNCRNA.475"; transcript_biotype "protein_coding"; +III PomBase gene 926437 926624 . + . gene_id "SPNCRNA.475"; gene_biotype "ncRNA"; +III PomBase transcript 926437 926624 . + . transcript_id "SPNCRNA.475.1"; gene_id "SPNCRNA.475"; transcript_biotype "ncRNA"; III PomBase exon 926437 926624 . + 0 transcript_id "SPNCRNA.475.1"; gene_id "SPNCRNA.475"; -III PomBase gene 926672 926806 . + . gene_id "SPNCRNA.526"; gene_biotype "protein_coding"; -III PomBase transcript 926672 926806 . + . transcript_id "SPNCRNA.526.1"; gene_id "SPNCRNA.526"; transcript_biotype "protein_coding"; +III PomBase gene 926672 926806 . + . gene_id "SPNCRNA.526"; gene_biotype "ncRNA"; +III PomBase transcript 926672 926806 . + . transcript_id "SPNCRNA.526.1"; gene_id "SPNCRNA.526"; transcript_biotype "ncRNA"; III PomBase exon 926672 926806 . + 0 transcript_id "SPNCRNA.526.1"; gene_id "SPNCRNA.526"; III PomBase gene 927237 927485 . - . gene_id "SPNCRNA.7112"; gene_biotype "ncRNA"; III PomBase transcript 927237 927485 . - . transcript_id "SPNCRNA.7112.1"; gene_id "SPNCRNA.7112"; transcript_biotype "ncRNA"; @@ -47711,8 +47717,8 @@ III PomBase exon 1068182 1068254 . - 0 transcript_id "SPCTRNAARG.11.1"; gene_id III PomBase gene 1068597 1069142 . - . gene_id "SPNCRNA.1172"; gene_biotype "ncRNA"; III PomBase transcript 1068597 1069142 . - . transcript_id "SPNCRNA.1172.1"; gene_id "SPNCRNA.1172"; transcript_biotype "ncRNA"; III PomBase exon 1068597 1069142 . - 0 transcript_id "SPNCRNA.1172.1"; gene_id "SPNCRNA.1172"; -III PomBase gene 1068658 1068746 . + . gene_id "SPNCRNA.481"; gene_biotype "protein_coding"; -III PomBase transcript 1068658 1068746 . + . transcript_id "SPNCRNA.481.1"; gene_id "SPNCRNA.481"; transcript_biotype "protein_coding"; +III PomBase gene 1068658 1068746 . + . gene_id "SPNCRNA.481"; gene_biotype "ncRNA"; +III PomBase transcript 1068658 1068746 . + . transcript_id "SPNCRNA.481.1"; gene_id "SPNCRNA.481"; transcript_biotype "ncRNA"; III PomBase exon 1068658 1068746 . + 0 transcript_id "SPNCRNA.481.1"; gene_id "SPNCRNA.481"; III PomBase gene 1069166 1069244 . + . gene_id "SPCTRNALEU.11"; gene_biotype "tRNA"; III PomBase transcript 1069166 1069244 . + . transcript_id "SPCTRNALEU.11.1"; gene_id "SPCTRNALEU.11"; transcript_biotype "tRNA"; @@ -47806,8 +47812,8 @@ III PomBase exon 1092981 1093016 . + 0 transcript_id "SPCTRNAVAL.09.1"; gene_id III PomBase gene 1093083 1093154 . - . gene_id "SPCTRNATHR.08"; gene_biotype "tRNA"; III PomBase transcript 1093083 1093154 . - . transcript_id "SPCTRNATHR.08.1"; gene_id "SPCTRNATHR.08"; transcript_biotype "tRNA"; III PomBase exon 1093083 1093154 . - 0 transcript_id "SPCTRNATHR.08.1"; gene_id "SPCTRNATHR.08"; -III PomBase gene 1093231 1093387 . + . gene_id "SPNCRNA.483"; gene_biotype "protein_coding"; -III PomBase transcript 1093231 1093387 . + . transcript_id "SPNCRNA.483.1"; gene_id "SPNCRNA.483"; transcript_biotype "protein_coding"; +III PomBase gene 1093231 1093387 . + . gene_id "SPNCRNA.483"; gene_biotype "ncRNA"; +III PomBase transcript 1093231 1093387 . + . transcript_id "SPNCRNA.483.1"; gene_id "SPNCRNA.483"; transcript_biotype "ncRNA"; III PomBase exon 1093231 1093387 . + 0 transcript_id "SPNCRNA.483.1"; gene_id "SPNCRNA.483"; III PomBase gene 1096085 1096185 . - . gene_id "SPCTRNALEU.12"; gene_biotype "tRNA"; III PomBase transcript 1096085 1096185 . - . transcript_id "SPCTRNALEU.12.1"; gene_id "SPCTRNALEU.12"; transcript_biotype "tRNA"; @@ -47826,8 +47832,8 @@ III PomBase exon 1102866 1102909 . + 0 transcript_id "SPCTRNALEU.13.1"; gene_id III PomBase gene 1104517 1104729 . - . gene_id "SPNCRNA.7207"; gene_biotype "ncRNA"; III PomBase transcript 1104517 1104729 . - . transcript_id "SPNCRNA.7207.1"; gene_id "SPNCRNA.7207"; transcript_biotype "ncRNA"; III PomBase exon 1104517 1104729 . - 0 transcript_id "SPNCRNA.7207.1"; gene_id "SPNCRNA.7207"; -III PomBase gene 1105609 1105766 . + . gene_id "SPNCRNA.484"; gene_biotype "protein_coding"; -III PomBase transcript 1105609 1105766 . + . transcript_id "SPNCRNA.484.1"; gene_id "SPNCRNA.484"; transcript_biotype "protein_coding"; +III PomBase gene 1105609 1105766 . + . gene_id "SPNCRNA.484"; gene_biotype "ncRNA"; +III PomBase transcript 1105609 1105766 . + . transcript_id "SPNCRNA.484.1"; gene_id "SPNCRNA.484"; transcript_biotype "ncRNA"; III PomBase exon 1105609 1105766 . + 0 transcript_id "SPNCRNA.484.1"; gene_id "SPNCRNA.484"; III PomBase gene 1105840 1105911 . + . gene_id "SPCTRNATHR.09"; gene_biotype "tRNA"; III PomBase transcript 1105840 1105911 . + . transcript_id "SPCTRNATHR.09.1"; gene_id "SPCTRNATHR.09"; transcript_biotype "tRNA"; @@ -48076,8 +48082,8 @@ III PomBase CDS 1173490 1175529 . + 0 transcript_id "SPCC4B3.03c.1"; gene_id "SP III PomBase gene 1173464 1173839 . - . gene_id "SPNCRNA.7247"; gene_biotype "ncRNA"; III PomBase transcript 1173464 1173839 . - . transcript_id "SPNCRNA.7247.1"; gene_id "SPNCRNA.7247"; transcript_biotype "ncRNA"; III PomBase exon 1173464 1173839 . - 0 transcript_id "SPNCRNA.7247.1"; gene_id "SPNCRNA.7247"; -III PomBase gene 1175846 1175963 . - . gene_id "SPNCRNA.120"; gene_biotype "protein_coding"; -III PomBase transcript 1175846 1175963 . - . transcript_id "SPNCRNA.120.1"; gene_id "SPNCRNA.120"; transcript_biotype "protein_coding"; +III PomBase gene 1175846 1175963 . - . gene_id "SPNCRNA.120"; gene_biotype "ncRNA"; +III PomBase transcript 1175846 1175963 . - . transcript_id "SPNCRNA.120.1"; gene_id "SPNCRNA.120"; transcript_biotype "ncRNA"; III PomBase exon 1175846 1175963 . - 0 transcript_id "SPNCRNA.120.1"; gene_id "SPNCRNA.120"; III PomBase gene 1176759 1177794 . + . gene_id "SPCC4B3.02c"; gene_biotype "protein_coding"; III PomBase transcript 1176759 1177794 . + . transcript_id "SPCC4B3.02c.1"; gene_id "SPCC4B3.02c"; transcript_biotype "protein_coding"; @@ -52888,8 +52894,8 @@ III PomBase CDS 2391058 2391071 . - 0 transcript_id "SPCC1827.07c.1"; gene_id "S III PomBase gene 2390311 2391086 . + . gene_id "SPNCRNA.7740"; gene_biotype "ncRNA"; III PomBase transcript 2390311 2391086 . + . transcript_id "SPNCRNA.7740.1"; gene_id "SPNCRNA.7740"; transcript_biotype "ncRNA"; III PomBase exon 2390311 2391086 . + 0 transcript_id "SPNCRNA.7740.1"; gene_id "SPNCRNA.7740"; -III PomBase gene 2391631 2391821 . + . gene_id "SPNCRNA.40"; gene_biotype "protein_coding"; -III PomBase transcript 2391631 2391821 . + . transcript_id "SPNCRNA.40.1"; gene_id "SPNCRNA.40"; transcript_biotype "protein_coding"; +III PomBase gene 2391631 2391821 . + . gene_id "SPNCRNA.40"; gene_biotype "ncRNA"; +III PomBase transcript 2391631 2391821 . + . transcript_id "SPNCRNA.40.1"; gene_id "SPNCRNA.40"; transcript_biotype "ncRNA"; III PomBase exon 2391631 2391821 . + 0 transcript_id "SPNCRNA.40.1"; gene_id "SPNCRNA.40"; III PomBase gene 2392219 2394391 . + . gene_id "SPCP1E11.02"; gene_biotype "protein_coding"; III PomBase transcript 2392219 2394391 . + . transcript_id "SPCP1E11.02.1"; gene_id "SPCP1E11.02"; transcript_biotype "protein_coding";