WordPress default settings not communicated through UI when creating Pods

[JoryHogeveen]

Description

When creating a new Pod, for example a CPT, Pods is not communicating, not overriding the default settings that are in WordPress, like "rewrite" and "rewrite_with_front". These are true by default but in the Pods screens the checkboxes are unchecked.
Also, since these are true by default Pods should properly disable these features if not enabled in Pods. This currently does not happen since the feature is not existing in the Pods setting.

Only when I set the feature to true (checked) once, and unchecking it again will it actually set it to false and override the WordPress default.

This is very confusing for the average user (UX).

Version

3.2.8.2

Testing Instructions

1. Create a CPT without changing it's settings.
2. It will show "Rewrite" etc. as unchecked. (Note: it's not disabled but simply has no value)
3. Check front-end, you'll see that rewrite is enabled. (WP default)

[jamieburchell]

I believe this is also related.