diff --git a/workflows/_synb0_eddy.sh b/workflows/_synb0_eddy.sh index bac2046..edd4e93 100755 --- a/workflows/_synb0_eddy.sh +++ b/workflows/_synb0_eddy.sh @@ -31,7 +31,7 @@ mkdir -p $TMPDIR if [ ! -f OUTPUTS/b0_all_topup.nii.gz ] then TMPDIR=$TMPDIR \ - singularity run -B INPUTS/:/INPUTS -B OUTPUTS/:/OUTPUTS \ + singularity run -e -B INPUTS/:/INPUTS -B OUTPUTS/:/OUTPUTS \ -B ${NEW_SOFT_DIR}/fs7.1.0/license.txt:/extra/freesurfer/license.txt \ ${NEW_SOFT_DIR}/containers/synb0-disco_v3.0.sif --stripped fi