diff --git a/docs/TUTORIAL.md b/docs/TUTORIAL.md index 5835caf..34bd5b9 100644 --- a/docs/TUTORIAL.md +++ b/docs/TUTORIAL.md @@ -611,6 +611,8 @@ The same command applies for running it on PNL's GRX node: `dna007.partners.org` > NEW_SOFT_DIR=/data/pnl/soft/pnlpipe3/ +You should consult [SlicerDMRI/whitematteranalysis](https://github.com/SlicerDMRI/whitematteranalysis) repository +for meaning of the above arguments. ##### Through SSH @@ -625,6 +627,7 @@ wm_apply_ORG_atlas_to_subject.sh \ However, running it through SSH requires availability of `xvfb-run` on that server--may it be a PNL workstation or a GRX node. The good news is that we have already installed `xorg-x11-server-Xvfb` in most servers. So you should be all set. But if you find `xvfb-run`'s absence, reach out to PNL engineers for help. +Lastly, you can use the same `-x 1` flag to run it through `bsub` on `pri_pnl` queue in ERIS cluster.