add new conda env for filtlong

LaborBerlin · Jan 25, 2024 · c65ee58 · c65ee58
1 parent 8b731e3
commit c65ee58
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Showing 2 changed files with 19 additions and 0 deletions.
diff --git a/Snakefile b/Snakefile
@@ -181,6 +181,8 @@ rule rasusaMB:
 
 
 rule filtlong:
+    conda:
+        "env/conda-filtlong.yaml"
     threads: 1
     input:
         fq=get_ont_fq,
@@ -197,6 +199,8 @@ rule filtlong:
 
 
 rule filtlongMB:
+    conda:
+        "env/conda-filtlong.yaml"
     threads: 1
     input:
         fq=get_ont_fq,
@@ -214,6 +218,8 @@ rule filtlongMB:
 
 # for keeping num PerCent of the bases
 rule filtlongPC:
+    conda:
+        "env/conda-filtlong.yaml"
     threads: 1
     input:
         fq=get_ont_fq,
@@ -230,6 +236,8 @@ rule filtlongPC:
 
 
 rule filtlongMBql:
+    conda:
+        "env/conda-filtlong.yaml"
     threads: 1
     wildcard_constraints:
         mb="[0-9]+",
@@ -250,6 +258,8 @@ rule filtlongMBql:
 
 
 rule filtlongMBqln:
+    conda:
+        "env/conda-filtlong.yaml"
     threads: 1
     wildcard_constraints:
         mb="[0-9]+",

diff --git a/env/conda-filtlong.yaml b/env/conda-filtlong.yaml
@@ -0,0 +1,9 @@
+name: ont-assembly-snake-filtlong
+channels:
+  - conda-forge
+  - bioconda
+  - defaults
+  - anaconda
+dependencies:
+  - bioconda::filtlong=0.2.1
+