Feature/codecov (#61)

* testing

* point to cov files

* codecov.yml

* remove cobertura

* bundle

* no simplecov

* fix path ignore

* fixed codecov path

* .simplecov

* typo codecov

* codecov.yml ignoring tests and git

* badges README

Author: pirovc

.codecov.yml

@@ -0,0 +1,7 @@
+codecov:
+  ci:
+    - "travis.org"
+
+ignore:
+  - ".git/"
+  - "tests/"

.simplecov

@@ -0,0 +1,4 @@
+require 'codecov'
+require 'simplecov'
+
+SimpleCov.formatter = Codecov::SimpleCov::Formatter

.travis.yml

@@ -1,10 +1,17 @@
 language: bash
+dist: focal
 
 before_install:
+  - gem install bashcov codecov
   - sudo apt-get install parallel
 
 script:
-    - tests/libs/bats/bin/bats tests/integration_offline.bats
+  - bashcov tests/libs/bats/bin/bats tests/integration_offline.bats
+
+after_success:
+  - curl -Os https://uploader.codecov.io/latest/linux/codecov
+  - chmod +x codecov
+  - ./codecov -f coverage/codecov-result.json -Z
 
 notifications:
   email: false

README.md

@@ -1,4 +1,4 @@
-# genome_updater
+# genome_updater [![Build Status](https://travis-ci.com/pirovc/genome_updater.svg?branch=master)](https://travis-ci.com/pirovc/genome_updater) [![codecov](https://codecov.io/gh/pirovc/genome_updater/branch/master/graph/badge.svg)](https://codecov.io/gh/pirovc/genome_updater) [![Anaconda-Server Badge](https://anaconda.org/bioconda/genome_updater/badges/downloads.svg)](https://anaconda.org/bioconda/genome_updater)
 
 Bash script to download ***and update*** snapshots of the NCBI genomes repository (refseq/genbank) [1] with filters, detailed log, reports, file integrity check (MD5) and parallel [2] download support.
 
@@ -40,8 +40,6 @@ genome_updater downloads and keeps several snapshots of a certain sub-set of the
 
 ## Installation
 
-[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/genome_updater/README.html)
-
 With conda:
 
 	conda install -c bioconda genome_updater