merge https://github.com/phue/jupyter-nextflow-proxy functionality in here

Author: phue

README.md

@@ -2,6 +2,4 @@
 
 Spawn nextflow pipelines from Jupyter and configure them interactively.
 
-Works best together with https://github.com/phue/jupyter-nextflow-proxy.
-
 :warning: This requires the pipeline to come with a [nextflow_schema.json](https://nextflow-io.github.io/nf-schema/) (`draft-2020-12`)

nextflowspawner/__init__.py

@@ -10,9 +10,16 @@
 from traitlets import default, Dict, Unicode
 from urllib.parse import urlparse
 
+def ignite():
+    return {
+        'command': ['nextflow', 'run', os.environ['NXF_USER_WORKFLOW'], '-r', os.environ['NXF_USER_REVISION'], '--PORT={port}', '-resume', '-params-file', os.environ['NXF_USER_PARAMS']],
+        'timeout': 120,
+        'launcher_entry': {'title': 'Nextflow'}
+    }
+
 class NextflowSpawner(LocalProcessSpawner):
 
-    default_url = Unicode('/nextflow', help="The entrypoint for https://github.com/phue/jupyter-nextflow-proxy")
+    default_url = Unicode('/nextflow', help="The entrypoint for the server proxy")
 
     workflow_url = Unicode(config=True, help="The url of the pipeline repository.")
     workflow_revision = Unicode('main', config=True, help="The revision of the pipeline repository.")

setup.py

@@ -2,17 +2,20 @@
 
 setuptools.setup(
   name="nextflowspawner",
-  version='0.7.3',
+  version='0.8.0',
   url="https://github.com/phue/nextflowspawner",
   description="Spawn Nextflow pipelines from Jupyterhub and configure them interactively",  
   author="Patrick Hüther",
   keywords=['Jupyter', 'Nextflow'],
   classifiers=['Framework :: Jupyter'],
   entry_points={
+    'jupyter_serverproxy_servers': [
+        'nextflow = nextflowspawner:ignite'
+    ],
     'jupyterhub.spawners': [
         'nextflow = nextflowspawner:NextflowSpawner',
     ],
   },
   python_requires=">=3.10",
-  install_requires=['jsonschema', 'jupyterhub>=5.0.0', 'jupyter-nextflow-proxy@git+https://github.com/phue/[email protected]'],
+  install_requires=['jsonschema', 'jupyterhub>=5.0.0', 'jupyter-server-proxy'],
 )