Shorter checksums

bede · bede · commit 57ea75dd4bb6 · 2023-05-11T18:25:58.000+01:00
diff --git a/index.yml b/index.yml
@@ -1,7 +1,7 @@
-schema_version: 2-0-0
-metadata: The PHA4GE list of amplicon primer schemes
+schema_version: 0.9.0
+metadata: The PHA4GE list of tiling amplicon primer schemes
 repository: https://github.com/pha4ge/primer-schemes
-latest_doi: https://doi.coming.soon/
+latest_doi: ''
 license: CC-BY-4.0
 organisms:
 - organism: sars-cov-2
diff --git a/mpxv/yale/v3/info.yml b/mpxv/yale/v3/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: yale-v3
 organism: mpxv
 developers:
@@ -11,5 +11,5 @@ amplicon_size: 2000
 repository_url: https://github.com/pha4ge/primer-schemes/tree/main/mpxv/yale/v3
 citations:
 - https://www.protocols.io/view/monkeypox-virus-multiplexed-pcr-amplicon-sequencin-5qpvob1nbl4o/v3
-primer_checksum: primaschema:973600b2f6aa2fee87b99c4311b47afcec83e9da79270598edf41b2b8124ddcf
-reference_checksum: primaschema:3b3fa241d3d7968083d167ebfcdcae1ef9d1f8558b592bfec3201f6fe71b8f00
+primer_checksum: primaschema:973600b2f6aa2fee
+reference_checksum: primaschema:3b3fa241d3d79680
diff --git a/niv/nipah/v1/info.yml b/niv/nipah/v1/info.yml
@@ -1,10 +1,10 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: nipah-v1
 organism: niv
 developers:
 - organisation_name: ARTIC network
   home_page: https://artic.network
 amplicon_size: 400
 repository_url: https://github.com/pha4ge/primer-schemes/tree/main/niv/nipah/v1
-primer_checksum: primaschema:a56163858bad23072db0c4dac96c37294e7430b093397afba9ebd52a443c6aec
-reference_checksum: primaschema:97e2ee3d469ba0b48c2fd7f8ee916356e5a07412ba35d173da00e828b8d5b51b
+primer_checksum: primaschema:a56163858bad2307
+reference_checksum: primaschema:97e2ee3d469ba0b4
diff --git a/sars-cov-2/artic/v1/info.yml b/sars-cov-2/artic/v1/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: artic-v1
 organism: sars-cov-2
 aliases:
@@ -11,5 +11,5 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/ar
 citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:e1560cb6d7bf5c0411d80f56e5d6b3fa4f5e4006b1bfaa745b18059c249d0403
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:e1560cb6d7bf5c04
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/artic/v2/info.yml b/sars-cov-2/artic/v2/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: artic-v2
 organism: sars-cov-2
 aliases:
@@ -12,5 +12,5 @@ citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 derived_from: artic-v1
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:6b9e64d0968d826c637caa9df019d3bf157911592cf5f7506e6e8e7c5f191767
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:6b9e64d0968d826c
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/artic/v3/info.yml b/sars-cov-2/artic/v3/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: artic-v3
 organism: sars-cov-2
 aliases:
@@ -12,5 +12,5 @@ citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 derived_from: artic-v2
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:34ca07d9c616461fd7a1fae563188315a1fbfe7052bfbc4ee5d9ac8144ad8c56
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:34ca07d9c616461f
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/artic/v4.1/info.yml b/sars-cov-2/artic/v4.1/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: artic-v4.1
 organism: sars-cov-2
 aliases:
@@ -16,5 +16,5 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/ar
 citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 derived_from: artic-v4
-primer_checksum: primaschema:9005b441227985c882434ffce1e72682ea17591005f5e15c72a6fce774d630cb
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:9005b441227985c8
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/artic/v4/info.yml b/sars-cov-2/artic/v4/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: artic-v4
 organism: sars-cov-2
 aliases:
@@ -12,5 +12,5 @@ citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 derived_from: artic-v3
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:2df872deb2123004c098c5c96610a14e5cdc7b8b27593e9a3ad2d37d9282543b
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:2df872deb2123004
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/artic/v5.0.0_400/info.yml b/sars-cov-2/artic/v5.0.0_400/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: artic-v5.0.0_400
 organism: sars-cov-2
 developers:
@@ -9,5 +9,5 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/ar
 citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 derived_from: artic-v4.1
-primer_checksum: primaschema:869769fe308973a7c21fb3220d5cfc60fdd64999ae9762a2650100157fa754a7
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:869769fe308973a7
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/artic/v5.1.0_400/info.yml b/sars-cov-2/artic/v5.1.0_400/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: artic-v5.1.0_400
 organism: sars-cov-2
 developers:
@@ -10,5 +10,5 @@ citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 derived_from: artic-v5.0.0_400
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:f5314a544798382906d34700e8ec7fb0b5cfc8dc9ac496bf076f3f3ca1876a6d
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:f5314a5447983829
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/artic/v5.2.0_1200/info.yml b/sars-cov-2/artic/v5.2.0_1200/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: artic-v5.2.0_1200
 organism: sars-cov-2
 developers:
@@ -9,5 +9,5 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/ar
 citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:b33c1d942605ce25da394b0bd61eb21905bc664b7f6788378431a635d0e99e91
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:b33c1d942605ce25
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/artic/v5.2.0_400/info.yml b/sars-cov-2/artic/v5.2.0_400/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: artic-v5.2.0_400
 organism: sars-cov-2
 developers:
@@ -9,5 +9,5 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/ar
 citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 derived_from: artic-v5.1.0_400
-primer_checksum: primaschema:f2e406ea13f767aa2205f257fca55ad9f0dd3951027028a9cc113ad4ad959e7b
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:f2e406ea13f767aa
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/artic/v5.3.2_400/info.yml b/sars-cov-2/artic/v5.3.2_400/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: artic-v5.3.2_400
 organism: sars-cov-2
 developers:
@@ -13,6 +13,6 @@ citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 derived_from: artic-v5.2.0_400
 notes:
-  - https://community.artic.network/t/sars-cov-2-version-5-3-2-scheme-release/462
-primer_checksum: primaschema:223ca9c2d1c7944e284de625977def81c7b2b84595402cc7ad85d858e772d193
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+- https://community.artic.network/t/sars-cov-2-version-5-3-2-scheme-release/462
+primer_checksum: primaschema:223ca9c2d1c7944e
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/eden/v1/info.yml b/sars-cov-2/eden/v1/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: eden-v1
 organism: sars-cov-2
 aliases:
@@ -15,5 +15,5 @@ citations:
 - https://www.protocols.io/view/sars-cov-2-genome-sequencing-using-long-pooled-amp-kxygxeob4v8j/v1
 notes:
 - Protocol includes addendum for ONT sequencing
-primer_checksum: primaschema:9f9c80501b744d15c9f8f077f0d7b0a63fbf6f07903007fb4bd264c500138e49
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:9f9c80501b744d15
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/midnight/bccdc-v1/info.yml b/sars-cov-2/midnight/bccdc-v1/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: midnight-bccdc-v1
 organism: sars-cov-2
 derived_from: midnight-v1
@@ -14,5 +14,5 @@ citations:
 notes:
 - Accomodates P.1
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:62f2d91308027480dd030e937dce767f2d5cda5a47297895b878e8b6facaac06
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:62f2d91308027480
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/midnight/bccdc-v2/info.yml b/sars-cov-2/midnight/bccdc-v2/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: midnight-bccdc-v2
 organism: sars-cov-2
 derived_from: midnight-bccdc-v1
@@ -14,5 +14,5 @@ citations:
 notes:
 - Accomodates BA.1
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:50191ae0f7a45cf5f5e69253f76984cfffb81cf97751c8c696900f6a7d0cad18
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:50191ae0f7a45cf5
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/midnight/bccdc-v3/info.yml b/sars-cov-2/midnight/bccdc-v3/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: midnight-bccdc-v3
 organism: sars-cov-2
 derived_from: midnight-bccdc-v2
@@ -12,5 +12,5 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/mi
 citations:
 - https://dx.doi.org/10.17504/protocols.io.bwyppfvn
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:3e118ebd83d1a8613490e23c452ccc85422dd95a2726b5f39e8b1b1c46261505
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:3e118ebd83d1a861
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/midnight/bccdc-v4/info.yml b/sars-cov-2/midnight/bccdc-v4/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: midnight-bccdc-v4
 aliases:
 - midnight-idt-v2
@@ -16,9 +16,9 @@ amplicon_size: 1200
 repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/midnight/bccdc-v4
 citations:
 - https://dx.doi.org/10.17504/protocols.io.bwyppfvn
-primer_checksum: primaschema:6ed89a7ed159466dfc8244c372467e7319b1287e87438affc236cb2aa20adeb1
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:6ed89a7ed159466d
+reference_checksum: primaschema:7d5621cd3b3e498d
 notes:
 - Accomodates Omicron BA.2
-- IDT calls this the "-Midnight-1200 Amplicon Panel" and "Midnight Amplicon
-  Panel v2"
+- IDT calls this the "-Midnight-1200 Amplicon Panel" and "Midnight Amplicon Panel
+  v2"
diff --git a/sars-cov-2/midnight/ont-v3/info.yml b/sars-cov-2/midnight/ont-v3/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: midnight-ont-v3
 organism: sars-cov-2
 derived_from: midnight-v2
@@ -15,5 +15,5 @@ citations:
 - https://dx.doi.org/10.17504/protocols.io.bwyppfvn
 notes:
 - Accomodates Omicron BA.2
-primer_checksum: primaschema:2dab57b711f6e6b011648ec980fc987427fa48a6a2d227e39ac45316e3275813
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:2dab57b711f6e6b0
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/midnight/v1/info.yml b/sars-cov-2/midnight/v1/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: midnight-v1
 organism: sars-cov-2
 aliases:
@@ -16,5 +16,5 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/mi
 citations:
 - https://dx.doi.org/10.17504/protocols.io.bwyppfvn
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:e1303ce0367cc245e66b80c10f8086c60f64b501e43dff0c0a248e64c34389b7
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:e1303ce0367cc245
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/midnight/v2/info.yml b/sars-cov-2/midnight/v2/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: midnight-v2
 organism: sars-cov-2
 aliases:
@@ -20,5 +20,5 @@ notes:
 - https://twitter.com/freed_nikki/status/1464477522448433156
 - Not considered a new version by Freed et al. and IDT despite additional primer
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:8f733a1f180c435af14d88fa395df5f88e1e1e0e9bde2c0719af8111079afce5
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:8f733a1f180c435a
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/varskip/vsl1a/info.yml b/sars-cov-2/varskip/vsl1a/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: varskip-vsl1a
 display_name: VarSkip VSL1A
 organism: sars-cov-2
@@ -13,6 +13,7 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/va
 citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 notes:
-- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad Langhorst
-primer_checksum: primaschema:f0d4caf86103e5104d2d29d15ffa66d71a29a923dc094bb94dac3c80aef45059
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad
+  Langhorst
+primer_checksum: primaschema:f0d4caf86103e510
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/varskip/vss1a/info.yml b/sars-cov-2/varskip/vss1a/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: varskip-vss1a
 display_name: VarSkip VSS1A
 organism: sars-cov-2
@@ -15,7 +15,8 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/va
 citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 notes:
-- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad Langhorst
+- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad
+  Langhorst
 primer_scheme_status: DEPRECATED
-primer_checksum: primaschema:f0d4caf86103e5104d2d29d15ffa66d71a29a923dc094bb94dac3c80aef45059
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:f0d4caf86103e510
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/varskip/vss2a/info.yml b/sars-cov-2/varskip/vss2a/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: varskip-vss2a
 display_name: VarSkip VSS2A
 organism: sars-cov-2
@@ -15,7 +15,8 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/va
 citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 notes:
-- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad Langhorst
+- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad
+  Langhorst
 derived_from: varskip-vss1a
-primer_checksum: primaschema:2666515f9715280a43fdad7ffc5eeb0ffb2948f5f4ce07ccd71d572453f22daa
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:2666515f9715280a
+reference_checksum: primaschema:7d5621cd3b3e498d
diff --git a/sars-cov-2/varskip/vss2b/info.yml b/sars-cov-2/varskip/vss2b/info.yml
@@ -1,4 +1,4 @@
-schema_version: 2-0-0
+schema_version: 0.9.0
 name: varskip-vss2b
 display_name: VarSkip VSS2B
 organism: sars-cov-2
@@ -15,7 +15,8 @@ repository_url: https://github.com/pha4ge/primer-schemes/tree/main/sars-cov-2/va
 citations:
 - https://doi.org/10.1101%2F2020.09.04.283077
 notes:
-- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad Langhorst
+- Adapted from bed + tsv at https://github.com/nebiolabs/VarSkip with help from Brad
+  Langhorst
 derived_from: varskip-vss2a
-primer_checksum: primaschema:e4242c52aff32c590f8b1354bfacf359e3b7f6278263159116602149d8612539
-reference_checksum: primaschema:7d5621cd3b3e498d0c27fcca9d3d3c5168c7f3d3f9776f3005c7011bd90068ca
+primer_checksum: primaschema:e4242c52aff32c59
+reference_checksum: primaschema:7d5621cd3b3e498d
