From 9f758db4f03638d374c73b3449519a1412de7e32 Mon Sep 17 00:00:00 2001 From: Marco van Zwetselaar Date: Mon, 30 Dec 2024 04:07:07 +0300 Subject: [PATCH] Formatting fixes --- hAMRonization/AmrFinderPlusIO.py | 2 +- hAMRonization/hAMRonizedResult.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/hAMRonization/AmrFinderPlusIO.py b/hAMRonization/AmrFinderPlusIO.py index 9d1f2f0..8bbbf10 100644 --- a/hAMRonization/AmrFinderPlusIO.py +++ b/hAMRonization/AmrFinderPlusIO.py @@ -79,7 +79,7 @@ def __init__(self, source, metadata): header = next(fh).strip().split("\t") try: first_result = next(fh) - prot_id = header.index("Protein identifier") + prot_id = header.index("Protein identifier") if first_result.strip().split("\t")[prot_id] == "NA": self.field_mapping = nucleotide_field_mapping else: diff --git a/hAMRonization/hAMRonizedResult.py b/hAMRonization/hAMRonizedResult.py index 439ef42..3a2d8e4 100644 --- a/hAMRonization/hAMRonizedResult.py +++ b/hAMRonization/hAMRonizedResult.py @@ -77,7 +77,7 @@ def __post_init__(self): input_file_name = getattr(self, "input_file_name") input_file_name = os.path.basename(input_file_name) - for suffix in [ ".gz", ".fna", ".fasta", ".fsa", ".faa", ".fa" ]: + for suffix in [".gz", ".fna", ".fasta", ".fsa", ".faa", ".fa"]: input_file_name = input_file_name.removesuffix(suffix) setattr(self, "input_file_name", input_file_name)