From 227cd2579e65d9bb6e019d7b3e16538a3e1328cd Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?In=C3=AAs=20Mendes?= Date: Thu, 8 Aug 2024 09:06:06 +0100 Subject: [PATCH] Close #88 --- README.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/README.md b/README.md index bf98c1b..81aa757 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,5 @@ ![Python package](https://github.com/pha4ge/hAMRonization/workflows/test_package/badge.svg) +[![Preprint](https://img.shields.io/badge/Preprint-10.1101/2024.03.07.583950-blue)](https://doi.org/10.1101/2024.03.07.583950) [![DOI](https://zenodo.org/badge/248040662.svg)](https://zenodo.org/badge/latestdoi/248040662) [![Docs English](https://img.shields.io/badge/Documentation-English-blue)](https://github.com/pha4ge/hAMRonization/blob/master/docs/subgrant/PHA4GE_AMR_SubGrant_Documentation.pdf) [![Docs English](https://img.shields.io/badge/Documentation-Español-blue)](https://github.com/pha4ge/hAMRonization/blob/master/docs/subgrant/PHA4GE_hAMRonization_espan%CC%83ol.pdf) @@ -346,3 +347,6 @@ Here are some known issues that we would welcome input on trying to solve! - `contig_id` isn't general enough when some tools this ID naturally corresponds to a `read_name` (deepARG), individual ORF (resfams), or protein sequence (AFP with protein input): *change to `query_id_name` or similar?* +## Citation +If you use hAMRonization please cite the following publication: +> I Mendes et al. 2024. "hAMRonization: Enhancing antimicrobial resistance prediction using the PHA4GE AMR detection specification and tooling". bioRxiv. https://doi.org/10.1101/2024.03.07.583950