Taxon identifiers for training data?

[jolespin]

Do you happen to have taxon identifiers for the training data in this file?

https://genome.cshlp.org/content/suppl/2018/03/22/gr.228429.117.DC1/Supplemental_Table_S1.xlsx

It's currently difficult to know which sequences are associated with these.

Here's the list but it's difficult to search the names. Did you you download them from NCBI or another database?

Organisms

Streptococcus pneumoniae TIGR4
Clostridium acetobutylicum ATCC 824
Staphylococcus carnosus subsp. carnosus TM300
Mycobacterium bovis BCG Pasteur 1173P2
Staphylococcus aureus subsp. aureus Mu50
Orientia tsutsugamushi str. Ikeda 
Colwellia psychrerythraea 34H
Synechococcus sp. CC9605
Nitrosococcus oceani ATCC 19707
Anaeromyxobacter dehalogenans 2CP-C
Mycobacterium vanbaalenii PYR-1
Prochlorococcus marinus str. AS9601
Prochlorococcus marinus str. MIT 9515
Shewanella loihica PV-4
Rickettsia akari str. Hartford
Coxiella burnetii RSA 331
Synechococcus sp. PCC 7002
Rhodobacter sphaeroides KD131
Sulfurihydrogenibium azorense Az-Fu1
Vibrio cholerae M66-2
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Ammonifex degensii KC4
Thermobaculum terrenum ATCC BAA-798 
Bacillus megaterium QM B1551
Lactobacillus casei BL23
 Streptococcus equi subsp. equi 4047
Streptococcus gallolyticus UCN34
Gluconacetobacter diazotrophicus PAl 5
Helicobacter mustelae 12198
Agrobacterium tumefaciens str. C58
Syntrophothermus lipocalidus DSM 12680
Shigella sonnei Ss046
Legionella pneumophila 2300/99 Alcoy
Prevotella melaninogenica ATCC 25845
Acetohalobium arabaticum DSM 5501
Corynebacterium pseudotuberculosis 1002
Cyanothece sp. PCC 7822
Helicobacter pylori SJM180
 Streptococcus parasanguinis ATCC 15912
Alicycliphilus denitrificans BC
Escherichia coli O83:H1 str. NRG 857C
Mycoplasma bovis PG45 clone MU clone A2
Bacillus subtilis BSn5
Thermus scotoductus SA-01
Staphylococcus pseudintermedius ED99
Acinetobacter calcoaceticus PHEA-2
Lactobacillus amylovorus strain 30SC
Mycobacterium tuberculosis H37Rv 
Lactobacillus buchneri NRRL B-30929
Leuconostoc sp. C2
Weissella koreensis KACC 15510
Collimonas fungivorans Ter331
Streptococcus suis SS12
Salmonella enterica subsp. enterica serovar Typhimurium str. 798
Emticicia oligotrophica DSM 17448
Aequorivita sublithincola DSM 14238    
Terriglobus roseus DSM 18391    
Pantoea ananatis LMG 5342    
Escherichia coli ST131     
Mycoplasma gallisepticum VA94_7994-1-7P     
Mycoplasma genitalium M2288     
Thermus oshimai JL-2     
Geitlerinema sp. PCC 7407    
Chlamydia trachomatis L1/224     
Mycoplasma pneumoniae PO1     
Thermoanaerobacterium thermosaccharolyticum M0795     
Candidatus Blochmannia chromaiodes str. 640   
Bacillus subtilis XF-1     
Sinorhizobium meliloti 2011     
Raoultella ornithinolytica B6     
Lactobacillus rhamnosus LOCK908     
Streptococcus agalactiae 09mas018883     
Streptococcus agalactiae ILRI005     
Listeria monocytogenes strain N1-011A    
Chlamydia trachomatis RC-F(s)/342     
Proteus mirabilis BB2000     
Staphylococcus aureus subsp. aureus SA957   
Mycoplasma parvum str. Indiana    
Halyomorpha halys symbiont DNA    
Lactococcus lactis subsp. lactis KLDS 4.0325  
Burkholderia pseudomallei NCTC 13179    
Rhizobium leguminosarum bv. trifolii CB782   
Listeria monocytogenes WSLC1042     
Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120005
Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110361
Salmonella enterica subsp. enterica serovar Enteritidis str. EC20110353
Azospirillum brasilense strain Az39    
Brucella canis strain SVA13    
Acinetobacter baumannii strain AC29    
Bacillus methanolicus MGA3     
Neorhizobium galegae      
Enterococcus faecium T110     
Flavobacterium psychrophilum strain CSF259-93    
Acinetobacter baumannii strain AB030    
Burkholderia mallei strain FMH 23344   
Burkholderia cepacia strain DDS 7H-2   
Paenibacillus sp. FSL H7-0737    
Burkholderia cenocepacia strain DWS 0.37   
Streptococcus pyogenes strain 7F7    
Bacillus cereus strain 03BB87    
Hymenobacter sp. DG25B     
Staphylococcus aureus strain 33b    
Francisella guangzhouensis strain 08HL01032    
Staphylococcus hyicus strain ATCC 11249   
Aeromonas hydrophila J-1     
Acinetobacter baumannii NCGM 237    
Bacillus coagulans DSM 1 = ATCC 7050 
Mycoplasma capricolum subsp. capripneumoniae 87001   
Xanthomonas citri subsp. citri strain MN10  
Xanthomonas citri subsp. citri strain AW14  
Mannheimia haemolytica strain 89010807N lktA-   
Mycoplasma gallinaceum strain B2096 8B   
Oleispira antarctica strain RB-8    
Xenorhabdus poinarii str. G6    
Staphylococcus aureus strain FCFHV36    
Thermotoga maritima strain Tma200    
Streptococcus agalactiae strain SS1    
Xanthomonas oryzae pv. oryzicola strain CFBP2286  
Chlamydia trachomatis D/CS637/11     
Planococcus sp. L10.15     
Pseudomonadaceae bacterium C6819     
Mycobacterium bovis BCG strain Russia 368  
Streptococcus mitis strain KCOM 1350 (= ChDC B183)
Bifidobacterium breve strain BR3    
Synechocystis sp. PCC 6803 substrain GT-G  
Burkholderia cepacia ATCC 25416 chromosome 1  
Campylobacter jejuni strain CJM1cam    
Corynebacterium pseudotuberculosis strain 1002B    
Rickettsia rhipicephali strain HJ#5    
Bacillus amyloliquefaciens strain MBE1283    
Salmonella enterica subsp. enterica serovar Enteritidis strain CMCC50041
Campylobacter jejuni strain CJ677CC532    
Bacillus cereus strain FORC_013    
Klebsiella oxytoca DNA complete genome strain: JKo3 
Streptococcus mutans strain NG8    
Achromobacter xylosoxidans strain FDAARGOS_162    
Alteromonas sp. Mac1     
Rhodobacter sphaeroides strain MBTLJ-8    
Rickettsia prowazekii strain Naples-1    
Bordetella pertussis strain E476    
Bordetella pertussis strain I480    
Bordetella pertussis strain I669    
Mycobacterium abscessus strain FLAC003    
Streptomyces ambofaciens strain DSM 40697   
Azospirillum humicireducens strain SgZ-5    
Rhizobium phaseoli strain R611    
Lactobacillus plantarum strain NCU116    
Bacillus anthracis strain Parent1    
Bacillus anthracis strain PR01    
Serinicoccus sp. JLT9     
Vibrio scophthalmi strain VS-12    
Enterococcus faecalis strain KB1    
Candidatus Tremblaya princeps isolate TPMHIR1   
Plesiomonas shigelloides strain NCTC10360    
Atribacteria bacterium SCGC AAA255-E04    
Aerophobetes bacterium JGI 0000014-C22    
Candidate division TM6 bacterium GW2011_GWF2_30_66 UR12_C0001  
Candidate division WS6 bacterium GW2011_GWC1_36_11 UR96_C0001  
Berkelbacteria bacterium GW2011_GWA1_36_9 US31_C0001    
Candidatus Falkowbacteria bacterium GW2011_GWC2_38_22 US83_C0001   
Candidatus Curtissbacteria bacterium GW2011_GWC2_38_9 UT12_C0001   
Candidate division WS6 bacterium GW2011_GWF2_39_15 UT34_C0001  
Candidatus Daviesbacteria bacterium GW2011_GWA2_39_33 UT45_C0001   
Candidate division CPR2 bacterium GW2011_GWD1_39_7 UT59_C0001  
Candidatus Levybacteria bacterium GW2011_GWB1_41_21 UU52_C0001   
Candidatus Giovannonibacteria bacterium GW2011_GWC2_44_9 UW81_C0001   
Candidatus Gottesmanbacteria bacterium GW2011_GWA2_42_18 UV09_C0001   
Candidatus Magasanikbacteria bacterium GW2011_GWC2_42_27 UV18_C0001   
Candidate division WWE3 bacterium GW2011_GWA1_43_94 UW13_C0001  
Candidatus Collierbacteria bacterium GW2011_GWA1_45_15 UW96_C0001   
Candidatus Azambacteria bacterium GW2011_GWD2_46_48 UX56_C0001   
Candidate division Kazan bacterium GW2011_GWC1_52_13 VE99_C0001  
Candidate division WOR_3 bacterium SM1_77 WOR1_30_36_10180  
Candidate division WOR-1 bacterium RIFOXYB2_FULL_36_35   
Candidate division CPR3 bacterium RIFOXYB2_FULL_35_8   
Candidate division WWE3 bacterium RIFCSPHIGHO2_12_FULL_38_15   
Candidate division WWE3 bacterium RIFOXYB1_FULL_42_27   
Candidatus Abawacabacteria bacterium RBG_16_42_10    
Candidatus Amesbacteria bacterium RIFCSPLOWO2_01_FULL_48_50    
Candidatus Adlerbacteria bacterium RIFCSPHIGHO2_12_FULL_53_18    
Candidatus Beckwithbacteria bacterium RIFCSPHIGHO2_02_FULL_49_13    
Candidatus Daviesbacteria bacterium RIFCSPLOWO2_01_FULL_39_23    
Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_46_24    
Candidatus Firestonebacteria bacterium GWA2_43_8    
Candidatus Glassbacteria bacterium RBG_16_58_8    
Candidatus Blackburnbacteria bacterium RIFCSPHIGHO2_02_FULL_44_20    
Candidatus Chisholmbacteria bacterium RIFCSPHIGHO2_01_FULL_48_12    
Candidatus Brennerbacteria bacterium RIFOXYD1_FULL_41_16    
Candidatus Buchananbacteria bacterium RIFCSPHIGHO2_02_FULL_56_16    
Candidatus Colwellbacteria bacterium RIFCSPHIGHO2_02_FULL_45_17    
Candidatus Harrisonbacteria bacterium RIFCSPLOWO2_01_FULL_40_28    
Candidatus Komeilibacteria bacterium RIFOXYD1_FULL_37_29    
Candidatus Liptonbacteria bacterium RIFCSPHIGHO2_01_FULL_57_28    
Candidatus Komeilibacteria bacterium RIFOXYD2_FULL_37_8    
Methanococcus voltae A3     
Methanosarcina mazei strain Goe1    
Methanopyrus kandleri AV19     
Pyrobaculum aerophilum str. IM2    
Nanoarchaeum equitans Kin4-M     
Picrophilus torridus DSM 9790    
Methanothermobacter thermautotrophicus str. Delta H   
Archaeoglobus fulgidus DSM 4304    
Methanocella paludicola SANAE DNA    
Pyrococcus horikoshii OT3 DNA    
Aeropyrum pernix K1 DNA    
Methanococcus maripaludis strain S2    
Methanococcoides burtonii DSM 6242    
Hyperthermus butylicus DSM 5456    
Thermofilum pendens Hrk 5    
Methanocorpusculum labreanum Z     
Methanoculleus marisnigri JR1     
Methanococcus maripaludis C5     
Pyrobaculum arsenaticum DSM 13514    
Methanobrevibacter smithii ATCC 35061    
Methanococcus vannielii SB     
Methanococcus aeolicus Nankai-3     
Methanococcus maripaludis C7     
Candidatus Methanoregula boonei 6A8    
Ignicoccus hospitalis KIN4/I     
Caldivirga maquilingensis IC-167     
Thermococcus onnurineus NA1     
Nitrosopumilus maritimus SCM1     
Methanococcus maripaludis C6     
Candidatus Korarchaeum cryptofilum OPF8    
Thermoproteus neutrophilus V24Sta     
Desulfurococcus kamchatkensis 1221n     
Candidatus Methanosphaerula palustris E1-9c    
Halorubrum lacusprofundi ATCC 49239    
Thermococcus gammatolerans EJ3     
Sulfolobus islandicus L.S.2.15     
Sulfolobus islandicus M.14.25     
Sulfolobus islandicus Y.G.57.14     
Sulfolobus islandicus Y.N.15.51     
Halomicrobium mukohataei DSM 12286    
Methanobrevibacter ruminantium M1     
Methanocaldococcus vulcanius M7     
Haloterrigena turkmenica DSM 5511    
Natrialba magadii ATCC 43099    
Methanohalophilus mahii DSM 5219    
Natronomonas pharaonis DSM 2160    
Methanocella arvoryzae MRE50     
Halobacterium salinarum R1     
Methanothermobacter marburgensis str. Marburg    
Methanoplanus petrolearius DSM 11571    
Thermococcus barophilus MP     
Thermococcus sp. AM4     
Ferroplasma acidarmanus fer1     
Methanothermus fervidus DSM 2088    
Halogeometricum borinquense DSM 11551    
Methanothermococcus okinawensis IH1     
Desulfurococcus mucosus DSM 2162    
Sulfolobus islandicus HVE10/4     
Vulcanisaeta moutnovskia 768-28     
Thermoproteus uzoniensis 768-20     
Archaeoglobus veneficus SNP6     
Methanosarcina barkeri str. Fusaro    
Methanohalobium evestigatum Z-7303     
Methanosaeta concilii GP-6     
Metallosphaera cuprina Ar-4     
Acidianus hospitalis W1     
Methanobacterium paludis strain SWAN1    
Halopiger xanaduensis SH-6     
Thermococcus sp. 4557     
Pyrolobus fumarii 1A     
Haloarcula hispanica ATCC 33960    
Halophilic archaeon DL31     
Natronobacterium gregoryi SP2     
Natrinema pellirubrum DSM 15624    
Halobacterium sp. DL1     
Pyrobaculum ferrireducens strain 1860    
Methanosaeta harundinacea 6Ac     
Haloquadratum walsbyi C23     
Thermogladius cellulolyticus 1633     
Pyrococcus furiosus COM1     
Natrinema sp. J7-2     
Candidatus Nitrosopumilus koreensis AR1    
Candidatus Nitrosopumilus sp. AR2    
Candidatus Methanomethylophilus alvus Mx1201    
Methanoculleus bourgensis MS2T     
Methanolobus psychrophilus R15     
Haloferax mediterranei ATCC 33500    
Caldisphaera lagunensis DSM 15908    
Methanoregula formicicum SMSP     
Aciduliprofundum sp. MAR08-339     
Halovivax ruber XH-70     
Methanomethylovorans hollandica DSM 15978    
Natronococcus occultus SP4     
Sulfolobus acidocaldarius N8     
Methanosarcina mazei Tuc01     
Thermoplasmatales archaeon BRNA1     
Archaeoglobus sulfaticallidus PM70-1     
Salinarchaeum sp. Harcht-Bsk1     
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1    
Halorhabdus tiamatea SARL4B     
Haloarcula hispanica N601     
Sulfolobus acidocaldarius SUSAZ     
Thermococcus sp. ES1     
Thermococcus nautili strain 30-1    
Aeropyrum camini SY1 = JCM 12091  
Natronomonas moolapensis 8.8.11     
Nitrososphaera viennensis EN76     
Candidatus Nitrososphaera evergladensis SR1    
Archaeoglobus fulgidus DSM 8774    
Methanocaldococcus bathoardescens strain JH146    
Methanobacterium formicicum strain BRM9    
Thermococcus eurythermalis strain A501    
Geoglobus acetivorans strain SBH6    
Candidatus Methanoplasma termitum strain MpT1   
Candidatus Nitrosopelagicus brevis strain CN25   
Thermofilum carboxyditrophus 1505     
Thermococcus guaymasensis DSM 11113    
Haloarcula sp. CBA1115     
Archaeon GW2011_AR10      
Methanobacterium formicicum genome assembly DSM1535   
Sulfolobus solfataricus strain SULB    
Sulfolobus solfataricus strain SULC    
Sulfolobus solfataricus strain SULA    
Methanosarcina sp. WWM596     
Methanosarcina barkeri str. Wiesmoor    
Methanosarcina siciliae T4/M     
Methanosarcina siciliae HI350     
Methanosarcina mazei WWM610     
Methanosarcina mazei LYC     
Methanosarcina mazei C16     
Methanosarcina lacustris Z-7289     
Methanosarcina horonobensis HB-1     
Methanosarcina barkeri 3     
Methanococcoides methylutens MM1     
Thermofilum sp. 1807-2     
Geoglobus ahangari strain 234    
Halanaeroarchaeum sulfurireducens strain HSR2    
Pyrobaculum sp. WP30     
Haloferax gibbonsii strain ARA6    
Metallosphaera sedula strain ARS50-1    
Metallosphaera sedula strain ARS120-2    
Metallosphaera sedula strain SARC-M1    
Halanaeroarchaeum sulfurireducens strain M27-SA2    
Pyrodictium delaneyi strain Su06    
Thermococcus barophilus strain CH5    
Methanobrevibacter millerae strain SM9    
Ignicoccus islandicus DSM 13165    
Thermococcus sp. 2319x1     
Halobacterium hubeiense genome assembly Halobacterium hubeiense JI20-1 
Nanoarchaeota archaeon 7A     
Methanogenic archaeon ISO4-H5     
Methanobrevibacter olleyae strain YLM1    
Pyrococcus sp. NCB100     
Thermococcus sp. CDGS     
Methanoculleus sp. MAB1 isolate Methanoculleus sp MAB1 
Sulfolobus solfataricus strain P1    
Aigarchaeota archaeon SCGC AAA471-E14    
Aigarchaeota archaeon SCGC AAA471-B22    
Aigarchaeota archaeon JGI 0000001-A7    
Aigarchaeota archaeon JGI 0000106-J15    
Aigarchaeota archaeon SCGC AAA471-E14    
Aigarchaeota archaeon SCGC AAA471-E14    
Aigarchaeota archaeon SCGC AAA471-F17    
Candidatus Thorarchaeota archaeon SMTZ1-83    
Crenarchaeota archaeon SCGC AAA471-B05    
Crenarchaeota archaeon SCGC AAA471-L14    
Thermoplasmatales archaeon DG-70 15865    
Acidilobus saccharovorans 345-15     
Caldisphaera lagunensis DSM 15908    
Desulfurococcus fermentans DSM 16532    
Ignisphaera aggregans DSM 17230    
Staphylothermus hellenicus DSM 12710    
Thermogladius cellulolyticus 1633     
Thermosphaera aggregans DSM 11486    
Hyperthermus butylicus DSM 5456    
Pyrolobus fumarii 1A     
Fervidicoccus fontis Kam940     
Acidianus hospitalis W1     
Metallosphaera sedula DSM 5348    
Sulfolobus solfataricus P2     
Sulfolobales archaeon Acd1     
Sulfolobales archaeon AZ1 isolate    
Thermofilum pendens Hrk 5456    
Caldivirga maquilingensis IC-167     
Thermoproteus neutrophilus V24Sta     
Thermoproteus uzoniensis 768-20     
Hadesarchaea archaeon YNP_45     
Hadesarchaea archaeon YNP_N21     
Candidatus Korarchaeum cryptofilum OPF8    
Nanoarchaeota archaeon SCGC AAA011-G17    
Nanoarchaeota archaeon SCGC AAA011-L15    
Nanoarchaeum equitans Kin4-M     
Candidatus Haloredivivus sp. G17    
Candidatus Nanosalinarum sp. J07AB56    
Candidatus Micrarchaeum acidiphilum ARMAN-2    
Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'   
Cenarchaeum symbiosum A     
Thaumarchaeota archaeon CSP1-1     
Thaumarchaeota archaeon SCGC AB-539-E09    
Candidatus Nitrosopumilus koreensis AR1    
Candidatus Nitrosoarchaeum koreensis MY1 MY1   
Nitrososphaera viennensis EN76     
Thaumarchaeota archaeon RBG_16_49_8     
Thaumarchaeota archaeon MY2 NKMY2_1    
Thaumarchaeota archaeon SCGC AAA282-K18    
Thaumarchaeota archaeon SCGC AB-179-E04    
Candidatus Caldiarchaeum subterraneum DNA    
Marine Group I thaumarchaeote SCGC AB-629-I23  
Marine Group III euryarchaeote SCGC AAA288-E19  
Thaumarchaeota archaeon SCGC AAA007-O23    
Marine Group I thaumarchaeote SCGC AAA799-E16  
Marine Group I thaumarchaeote SCGC AAA799-N04  
Candidatus Micrarchaeota archaeon RBG_16_49_10    
Candidate division WOR_3 bacterium SM1_77   
Candidatus Micrarchaeota archaeon RBG_16_36_9    
Candidatus Nanopusillus sp. Nst1    
halophilic archaeon J07HX64     
Vulcanisaeta distributa DSM 14429    
Plasmodium vivax
Trypanosoma brucei
Leishmania major strain Friedlin
Plasmodium falciparum strain 3D7
Eimeria tenella
Leishmania braziliensis MHOM/BR/75/M2904
Leishmania infantum JPCM5
Theileria annulata strain Ankara
Dictyostelium discoideum
Plasmodium knowlesi strain H
Toxoplasma gondii ME49 chromosome Ia
Thalassiosira pseudonana CCMP1335
Phaeodactylum tricornutum CCAP 1055/1
Cryptosporidium parvum Iowa II
Theileria parva strain Muguga
Neospora caninum Liverpool
Cryptosporidium parvum 
Trypanosoma brucei gambiense DAL972
Leishmania donovani BPK282A1
Leishmania mexicana MHOM/GT/2001/U1103
Ectocarpus siliculosus strain Ec 32
Plasmodium cynomolgi strain B 
Crithidia fasciculata strain Cf-Cl
Babesia equi strain WA
Leishmania sp. MAR LEM2494
Leishmania donovani strain BHU 1220 
Nannochloropsis gaditana strain B-31
Babesia microti strain RI 
Plasmodium coatneyi strain Hackeri 
Theileria orientalis strain Shintoku
Leishmania panamensis strain MHOM/PA/94/PSC-1
Babesia bigemina genome assembly Bbig001
Leishmania peruviana PAB-4377_V1
Plasmodium reichenowi strain SY57
Plasmodium gaboni strain SY75
Plasmodium berghei
Plasmodium yoelii
Laurentiella
Helicosporidium sp. ATCC 50920
Coccomyxa sp. LA000219
Trebouxia gelatinosa isolate LA000220 
Chlorella pyrenoidosa strain FACHB-9
Chlamydomonas applanata
Yarrowia lipolytica CLIB122
Schizosaccharomyces pombe
Zygosaccharomyces rouxii strain CBS732
Candida dubliniensis CD36
Encephalitozoon intestinalis
Saccharomyces kluyveri NRRL Y-12651
Aspergillus oryzae RIB40
Mycosphaerella graminicola IPO323
Myceliophthora thermophila ATCC 42464
Thielavia terrestris NRRL 8126
Eremothecium cymbalariae
Fusarium graminearum PH-1
Encephalitozoon hellem
Kazachstania africana CBS 2517
Saccharomyces cerevisiae R103 
Valsa mali strain 03-8 
Saccharomyces cerevisiae YJM1443
Saccharomyces cerevisiae YJM1447
Saccharomyces cerevisiae YJM1477
Saccharomyces cerevisiae YJM1479
Saccharomyces cerevisiae YJM1615
Sporisorium scitamineum strain SSC39
Torulaspora delbrueckii strain NRRL Y-50541
Eremothecium sinecaudum strain ATCC 58844
Kluyveromyces marxianus isolate B0399
Oikopleura dioica
Lottia gigantea 

[patrickwest]

I unfortunately do not have a taxonomic identifier for them, ie NCBI's taxonomy IDs. The genomes were collected mostly from NCBI and JGI's mycocosm, but a few were from JGI's genome portal as well.

I do have the sequences compiled still and could send you a copy if you're interested. Please send me an email if so.

[jolespin]

Yea, I had a feeling they would contain a mix of NCBI and JGI. Definitely interested in playing around with the fasta database if it's available. How big is the (compressed?) fasta file database? Thanks Patrick!

[jolespin]

Are you still able to transfer over the fasta files?

[patrickwest]

Sorry this slipped my mind, the compressed archive is 1.3 gbs. See if you can get it from here:
https://figshare.com/articles/dataset/eukrep_training_genomes_tar_gz/15145041