v1.3

Added options:

• --ani: set custom ANI threshold (default=0.95)
• --conserved-dna: set custom conserved DNA threshold (default=0.69)

v1.2.0

This is release is a purely technical update:

• ReferenceSeeker is now on PyPI (https://pypi.org/project/referenceseeker/)
• we dropped any Docker image support
• we dropped the scaffolding feature via MeDuSa in order to speedup a subsequent BioConda migration.

v1.1.0

Changes

• Added option to select numbers of candidate reference genomes to assess
• Output N50/L50 statistics after scaffolding contigs
• Added Mash distance values to output

Bug fixes

• Fixed MeDuSa Python3 dependencies
• Added Java dependency to Dockerfile

v1.0.1

This is a minor patch release fixing a MeDuSa related bug due to a missing MUMmer/show-coords binary.