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Database update #28

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MostafaYA opened this issue Jan 2, 2024 · 3 comments
Closed

Database update #28

MostafaYA opened this issue Jan 2, 2024 · 3 comments
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enhancement New feature or request

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@MostafaYA
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Hi,

The pre-built referenceseeker databases have not been updated since a while, causing some new species not to be detected. Would you please consider an update? I assume one can do this with the referenceseeker_db init but if you detail this in the README for the RefSeq Bacteria for example, that would be great

Thank you!

@MostafaYA MostafaYA added the enhancement New feature or request label Jan 2, 2024
@oschwengers
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Hi @MostafaYA,
thanks for reaching out. Indeed, they've become quite old. I'll put an update on my ToDo and try to address this ASAP.

@oschwengers oschwengers self-assigned this Jan 8, 2024
@oschwengers
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@MostafaYA I just finished and published a new version of the RS database: https://doi.org/10.5281/zenodo.10488564

Due to the Zenodo standard storage quota, I couldn't upload the GTDB bacteria part, if this is of interest, I'll figure out how to provide it, as well.

@oschwengers oschwengers pinned this issue Jan 12, 2024
@MostafaYA
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Thanks !!

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