Repositories list

• Training-modules

  Public
  Materials for short, half-day workshops

  Jupyter Notebook

  •

  Other

  •148•320•18•2•Updated Jan 30, 2025Jan 30, 2025

• Intro-to-rnaseq-hpc-salmon-flipped

  Public
  Introduction to bulk RNA-seq

  HTML

  •42•102•9•1•Updated Jan 29, 2025Jan 29, 2025

• Intro-to-R-flipped

  Public
  R

  •41•77•4•0•Updated Jan 28, 2025Jan 28, 2025

• Intro-to-shell-flipped

  Public
  HTML

  •24•39•5•0•Updated Jan 28, 2025Jan 28, 2025

• main

  Public template
  SCSS

  •

  Other

  •17•52•0•1•Updated Jan 21, 2025Jan 21, 2025

• scRNA-seq_online

  Public
  R

  •187•550•14•0•Updated Jan 16, 2025Jan 16, 2025

• Intro-to-R-mkdocs

  Public
  Python

  •1•0•4•0•Updated Jan 14, 2025Jan 14, 2025

• DGE_analysis_scRNAseq

  Public
  Approaches for looking at differential expression and differential abundance in scRNA-seq

  R

  •

  Creative Commons Zero v1.0 Universal

  •1•0•7•0•Updated Jan 8, 2025Jan 8, 2025

• EpiR

  Public
  Introduction to R for Epi summer program

  SCSS

  •4•3•0•0•Updated Dec 12, 2024Dec 12, 2024

• Peak_analysis_workshop

  Public
  An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq

  Shell

  •

  Creative Commons Zero v1.0 Universal

  •4•20•7•0•Updated Dec 10, 2024Dec 10, 2024

• variant_analysis

  Public
  HTML

  •10•30•6•0•Updated Dec 9, 2024Dec 9, 2024

• DGE_workshop_salmon_online

  Public
  HTML

  •82•186•8•0•Updated Oct 28, 2024Oct 28, 2024

• github_pages_demo

  Public
  My GitHub Pages Demo

  SCSS

  •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• variant_analysis_germline

  Public
  0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

• BMI713_Intro_to_HPC

  Public
  Workshop for Intro to Unix

  Shell

  •

  Other

  •14•6•0•0•Updated Oct 10, 2024Oct 10, 2024

• reproducibility-tools

  Public
  R

  •7•7•13•0•Updated Aug 13, 2024Aug 13, 2024

• shinylive_app

  Public
  My shinylive app

  0•0•0•0•Updated Jul 28, 2024Jul 28, 2024

• Intro-to-ChIPseq-flipped

  Public
  HTML

  •

  Creative Commons Zero v1.0 Universal

  •37•85•7•0•Updated Jun 25, 2024Jun 25, 2024

• BBS230B_2023

  Public
  RNA-seq experimental design and analysis

  SCSS

  •5•5•0•0•Updated May 6, 2024May 6, 2024

• bioinformatics_online

  Public
  Resource list and preparation instructions for online learning and teaching for Bioinformatics

  bioinformatics-learningbioinformatics-learning-resourcesbioinformatics-online

  SCSS

  •11•19•0•0•Updated Nov 13, 2023Nov 13, 2023

• publication_perfect

  Public
  Six hour hands-on to creating publication-quality plots in R

  SCSS

  •17•31•5•0•Updated Oct 26, 2023Oct 26, 2023

• testing_github_pages

  Public
  test

  SCSS

  •0•0•0•0•Updated Aug 28, 2023Aug 28, 2023

• rnaseq-cb321

  Public
  June 5, 2019

  HTML

  •3•9•0•0•Updated Jun 14, 2023Jun 14, 2023

• Intro-to-ChIPseq

  Public archive
  Intro to ChIPseq using HPC

  SCSS

  •155•293•14•1•Updated Jan 30, 2023Jan 30, 2023

• docker_hbctraining

  Public
  Docker images for training at Harvard Bioinformatics Core

  Dockerfile

  •3•2•0•0•Updated Jan 26, 2023Jan 26, 2023

• git-novice

  Public
  Version Control with Git

  HTML

  •

  Other

  •931•4•0•0•Updated Oct 20, 2022Oct 20, 2022

• RNA-seq-CB321qc_2022

  Public
  Teaching RNA-seq experimental design and analysis + data storage and sharing for genomics data

  SCSS

  •5•3•0•0•Updated Jun 8, 2022Jun 8, 2022

• Accessing_public_genomic_data

  Public
  Tutorials on accessing public reference and genomic data

  HTML

  •16•31•2•0•Updated Jun 7, 2022Jun 7, 2022

• dataskills_tutorials

  Public
  0•0•0•0•Updated Mar 29, 2022Mar 29, 2022

• rnaseq_overview

  Public
  Short course describing the considerations for a successful RNA-seq experiment

  HTML

  •

  Other

  •12•17•9•0•Updated Jan 13, 2022Jan 13, 2022