{"payload":{"pageCount":1,"repositories":[{"type":"Public","name":"2Tethya_genomes","owner":"PalMuc","isFork":false,"description":"The genome of the contractile demosponge Tethya wilhelma","allTopics":["genome","genome-annotation","genome-analysis","genome-assembly","metazoa","porifera","sponges"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-24T13:40:01.788Z"}},{"type":"Public","name":"beauty_in_the_beast","owner":"PalMuc","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Raku","color":"#0000fb"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-20T18:31:28.986Z"}},{"type":"Public","name":"CalciteSea","owner":"PalMuc","isFork":false,"description":"Data repository for Conci N., Griesshaber E., Rivera-Vicéns R., Schmahl W., Vargas S. and Wӧrheide G (2022) Molecular and mineral responses of corals grown under artificial Calcite Sea conditions.","allTopics":["coral","biomineralization","scleractinia","octocorallia"],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-03T10:07:19.199Z"}},{"type":"Public","name":"HaploTC","owner":"PalMuc","isFork":false,"description":"Target Capturing Genome-wide Loci in Marine Haplosclerids","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Creative Commons Zero v1.0 Universal","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-27T16:15:08.236Z"}},{"type":"Public","name":"Aphrocallistes_vastus_genome","owner":"PalMuc","isFork":false,"description":"Aphrocallistes vastus genome","allTopics":["genome","genome-annotation","genome-analysis","metazoa","biomineralization","porifera"],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"Creative Commons Attribution Share Alike 4.0 International","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-12T07:24:03.419Z"}},{"type":"Public","name":"SONNE_Hexactinellida","owner":"PalMuc","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-20T11:27:34.086Z"}},{"type":"Public","name":"triangulation","owner":"PalMuc","isFork":false,"description":"Supplementary data and pipelines for analyzing genome gene content data and morphology to create various phylogenies.","allTopics":["bash-script","proteome","genomes","phylogeny","homology-search","orthology","genomes-comparison","revbayes","full-genome"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":0,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-04T11:55:29.712Z"}},{"type":"Public","name":"KeratoseMuseOMICS","owner":"PalMuc","isFork":false,"description":"Data for Agne et al. Keratose sponge MuseOMICS: setting reference points in dictyoceratid demosponge phylogeny","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-08-17T08:52:09.140Z"}},{"type":"Public","name":"TransPi","owner":"PalMuc","isFork":false,"description":"TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly","allTopics":["rna-seq","annotation","nextflow","assembly","transcriptomics","denovo-assembly","rna-seq-pipeline","nextflow-pipeline","non-model-species"],"primaryLanguage":{"name":"Nextflow","color":"#3ac486"},"pullRequestCount":0,"issueCount":26,"starsCount":26,"forksCount":14,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2022-01-02T15:41:19.205Z"}},{"type":"Public","name":"TransPi_paper","owner":"PalMuc","isFork":false,"description":"TransPi - Supplementary files ","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2021-12-13T01:56:19.632Z"}},{"type":"Public","name":"PlasticsSponge","owner":"PalMuc","isFork":false,"description":"Sponges as bioindicators for microparticulate pollutants","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-06-07T13:29:41.584Z"}},{"type":"Public","name":"PlasticsBacteria","owner":"PalMuc","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2020-02-11T23:40:22.538Z"}},{"type":"Public","name":"Soft-Sponges-Tricky-Tree","owner":"PalMuc","isFork":false,"description":"Data sets of \"Soft Sponges with Tricky Tree: On the Phylogeny of Dictyoceratid Sponges\" by Erpenbeck D, Galitz A,Ekins M, Cook SdC, van Soest RWM, Hooper JNA, and Wörheide G. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-12-10T14:59:48.231Z"}},{"type":"Public","name":"Molecular-biodiversity-of-Red-Sea-demosponges.","owner":"PalMuc","isFork":false,"description":"Data set repository of Erpenbeck et al. (2016), Marine Pollution Bulletin 105:507-515. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper. ","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-12-10T11:33:33.845Z"}},{"type":"Public","name":"A-short-LSU-rRNA-fragment-as-a-standard-marker-for-integrative-taxonomy-in-calcareous-sponges","owner":"PalMuc","isFork":false,"description":"Alignment, secondary structure files, trees & more of Voigt & Wörheide (2016) Organisms Diversity & Evolution 16:53-64. To be used under the Creative Commons CC-BY-NC-ND license, please with quotation of the paper.","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-12-10T11:29:42.101Z"}},{"type":"Public","name":"Spongillida_Minimalist_Barcodes","owner":"PalMuc","isFork":false,"description":"Repository for: Minimalist barcodes for sponges: a case study classifying African freshwater Spongillida. Authors: Dirk Erpenbeck, Markus Steiner, Astrid Schuster, Martin J. Genner, Renata Manconi, Roberto Pronzato, Bernhard Ruthensteiner, Didier van den Spiegel, Rob W.M. van Soest, and Gert Wörheide","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2019-01-15T22:18:02.423Z"}},{"type":"Public","name":"mitoclocks2018","owner":"PalMuc","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Roff","color":"#ecdebe"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2018-07-30T21:08:47.289Z"}},{"type":"Public","name":"Montipora_digitata_resources","owner":"PalMuc","isFork":false,"description":"Companion repository for González-Pech et al.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2017-06-22T09:36:55.999Z"}},{"type":"Public","name":"bio-phyta","owner":"PalMuc","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Ruby","color":"#701516"},"pullRequestCount":0,"issueCount":1,"starsCount":2,"forksCount":1,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2011-12-07T10:23:25.000Z"}},{"type":"Public","name":"Kingdom-Assignment","owner":"PalMuc","isFork":false,"description":"A Ruby gem to parse BLASTplus XML output and annotate higher rank taxonomy","allTopics":[],"primaryLanguage":{"name":"Ruby","color":"#701516"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2011-10-17T17:08:13.000Z"}},{"type":"Public","name":"Annotate-GFF","owner":"PalMuc","isFork":false,"description":"Add annotations to a GFF file","allTopics":[],"primaryLanguage":{"name":"Ruby","color":"#701516"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2011-06-07T13:24:27.000Z"}},{"type":"Public","name":"Kingdom-Extraction","owner":"PalMuc","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Ruby","color":"#701516"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2011-04-21T13:23:49.000Z"}},{"type":"Public","name":"Kingdom-Splitter","owner":"PalMuc","isFork":false,"description":"A Ruby gem to sort out bacterial, archaeal and viral contaminations from genomic data. ","allTopics":[],"primaryLanguage":{"name":"Ruby","color":"#701516"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2011-04-21T10:03:32.000Z"}}],"repositoryCount":23,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"PalMuc repositories"}