Repositories list

• biopython

  Public
  Official git repository for Biopython (converted from CVS)

  Python

  •

  Other

  •1.8k•1•0•0•Updated Feb 9, 2012Feb 9, 2012

• cloudbiolinux

  Public
  CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

  Python

  •158•0•0•0•Updated Feb 7, 2012Feb 7, 2012

• durbinlib

  Public
  Kitchen sink of Java/Groovy classes for UCSC cancer genomics.

  Java

  •11•0•0•0•Updated Feb 4, 2012Feb 4, 2012

• predictionet

  Public
  This package contains a set of functions related to network inference combining genomic data and prior information extracted from biomedical literature and structured biological databases.The main function is able to generate networks using bayesian or regression-based inference methods; while the former is limited to < 100 of variables, the lat…

  C++

  •4•0•0•0•Updated Feb 1, 2012Feb 1, 2012

• Cancer-KBS_

  Public
  Cancer Knowledge based system is used for diagnosis of various types of cancers and getting information on supported types of cancers. It currently supports 10 types of common cancers suspected to be among the major types.

  Java

  •11•0•0•0•Updated Jan 25, 2012Jan 25, 2012

• CancersInCommon

  Public
  Ruby

  •2•0•0•0•Updated Jan 18, 2012Jan 18, 2012

• cancer-kbs

  Public
  This is a cancer knowledge base system

  Ruby

  •2•0•0•0•Updated Jan 6, 2012Jan 6, 2012

• Cancer-Classification

  Public
  A program that uses the k nearest neighbor algorithm and training data to predict whether cancer is malignant or benign

  Java

  •9•0•0•0•Updated Jan 1, 2012Jan 1, 2012

• franklin

  Public
  franklin library for NGS sequencing analysis.

  Python

  •

  GNU Affero General Public License v3.0

  •3•0•0•0•Updated Dec 22, 2011Dec 22, 2011

• cancersim

  Public
  A cancer cell simulation

  C

  •1•0•0•0•Updated Nov 23, 2011Nov 23, 2011

• ocelot

  Public
  An online cancer expression analysis tool

  JavaScript

  •2•0•0•0•Updated Nov 10, 2011Nov 10, 2011

• genefu

  Public
  R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.

  R

  •13•0•0•0•Updated Nov 2, 2011Nov 2, 2011

• CompleteGenomicsTools

  Public
  Software for manipulating and visualizing Complete Genomics data, with a focus on cancer

  Python

  •6•0•0•0•Updated Feb 5, 2011Feb 5, 2011

• lcp

  Public
  lung cancer detection project

  Other

  •2•0•0•0•Updated Nov 1, 2010Nov 1, 2010

• cancer-bayes

  Public
  Predicting breast cancer at 97.51% accuracy with Naive Bayes Classifier for learning purposes.

  Python

  •9•0•0•0•Updated May 1, 2010May 1, 2010