MIC-DKFZ

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75 repositories

image_classification
Public
🎯 Deep Learning Framework for Image Classification & Regression in Pytorch for Fast Experiments
framework computer-vision lightning image-processing regression cnn hydra classification imagenet image-classification
Python
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Apache License 2.0
•2•47•0•0•Updated Mar 7, 2025Mar 7, 2025
Longitudinal-Difference-Weighting
Public
Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting
Python
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Apache License 2.0
•0•3•0•0•Updated Mar 7, 2025Mar 7, 2025
miccai2024_midi-b-submission
Public
Jupyter Notebook
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Apache License 2.0
•0•3•0•0•Updated Mar 6, 2025Mar 6, 2025
LesionLocator
Public
1•11•2•0•Updated Mar 5, 2025Mar 5, 2025
acvl_utils
Public
Python
•3•10•3•2•Updated Feb 26, 2025Feb 26, 2025
nnUNet
Public
segmentation
Python
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Apache License 2.0
•1.9k•6.4k•269•24•Updated Feb 25, 2025Feb 25, 2025
predictive_image_biomarker_analysis
Public
Code for the paper "Enhancing predictive imaging biomarker discovery through treatment effect analysis", which can be used for training and evaluating CATE estimation models for identifying predictive imaging biomarkers from pre-treatment images.
Python
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Apache License 2.0
•1•1•0•0•Updated Feb 24, 2025Feb 24, 2025
ToothSeg
Public
Python
•0•1•0•0•Updated Feb 19, 2025Feb 19, 2025
iScience_GlioLymph_classification
Public
Python
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Other
•0•0•0•0•Updated Feb 17, 2025Feb 17, 2025
batchgeneratorsv2
Public
Python
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Apache License 2.0
•7•17•0•2•Updated Feb 13, 2025Feb 13, 2025
segmentation_failures_benchmark
Public
Python
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Apache License 2.0
•1•11•1•0•Updated Feb 12, 2025Feb 12, 2025
niicat
Public
This is a tool to quickly preview nifti images on the terminal
Python
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GNU General Public License v2.0
•10•59•2•1•Updated Feb 5, 2025Feb 5, 2025
Foreground-and-Anonymization-Area-Segmentation
Public
Other
•0•0•0•0•Updated Jan 20, 2025Jan 20, 2025
MedVol
Public
Python
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Apache License 2.0
•0•16•0•0•Updated Dec 29, 2024Dec 29, 2024
HD-BET
Public
MRI brain extraction tool
Python
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Apache License 2.0
•70•319•25•7•Updated Dec 18, 2024Dec 18, 2024
ADetect
Public
"Automated detection of aortic dissections (AD) from CT scans using deep segmentation and optimized thresholding. Applicable in emergency clinical settings, for research purposes only."
Python
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Apache License 2.0
•0•3•0•0•Updated Dec 9, 2024Dec 9, 2024
MultiTalent
Public
Implemention of the Paper "MultiTalent: A Multi-Dataset Approach to Medical Image Segmentation"
Python
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Apache License 2.0
•3•54•1•0•Updated Dec 3, 2024Dec 3, 2024
MedSAMCodingPowerUnit
Public
Python
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Apache License 2.0
•0•0•0•0•Updated Nov 26, 2024Nov 26, 2024
mario
Public
Python
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Apache License 2.0
•0•0•0•0•Updated Nov 22, 2024Nov 22, 2024
napari-nifti
Public
Python
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Apache License 2.0
•1•4•1•0•Updated Nov 18, 2024Nov 18, 2024
batchgenerators
Public
A framework for data augmentation for 2D and 3D image classification and segmentation
Jupyter Notebook
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Apache License 2.0
•225•1.1k•39•12•Updated Nov 7, 2024Nov 7, 2024
MurineAirwaySegmentation
Public
This is a joint project between Helmholtz Imaging (located at DKFZ) and Lin Yang and Otmar Schmid (Helmholtz Munich).
Python
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Apache License 2.0
•2•10•1•0•Updated Nov 6, 2024Nov 6, 2024
Skeleton-Recall
Public
Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures
Python
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Apache License 2.0
•5•90•4•0•Updated Nov 4, 2024Nov 4, 2024
MedNeXt
Public
[MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.
transformers medical-imaging medical-image-analysis medical-image-segmentation unet-image-segmentation mri-segmentation medical-ai ct-segmentation convnext mednext
Python
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Apache License 2.0
•34•381•14•0•Updated Nov 2, 2024Nov 2, 2024
autopet-3-submission
Public
Python
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Apache License 2.0
•1•10•1•1•Updated Oct 29, 2024Oct 29, 2024
miccai2024_cl-detection2024
Public
Python
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Apache License 2.0
•0•0•0•0•Updated Oct 2, 2024Oct 2, 2024
miccai2024_autopet3_datacentric
Public
Python
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Apache License 2.0
•1•7•0•0•Updated Oct 1, 2024Oct 1, 2024
agent-sam
Public
Segment Anything model wrapper used by the Medical Imaging Interaction Toolkit (MITK).
Python
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BSD 3-Clause "New" or "Revised" License
•1•5•0•0•Updated Sep 13, 2024Sep 13, 2024
BraTPRO
Public
Python
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Apache License 2.0
•0•1•0•0•Updated Sep 2, 2024Sep 2, 2024
MITK-Diffusion
Public
MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
simulation dicom registration segmentation modelling brain peak diffusion-mri tractography denoising
C++
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Other
•15•90•3•0•Updated Aug 28, 2024Aug 28, 2024