Repositories list

• franken_api

  Public
  serve the plotly json files to plot interactive franken plots

  Python

  •1•0•0•0•Updated Oct 4, 2024Oct 4, 2024

• jumble

  Public
  R

  •

  Other

  •0•1•0•0•Updated May 29, 2024May 29, 2024

• Clinical-Cancer-Genomics-Course

  Public
  HTML

  •2•1•0•0•Updated May 2, 2023May 2, 2023

• autoseq-docs

  Public
  Documentation for autoseq python command line tool

  1•0•0•0•Updated Dec 27, 2022Dec 27, 2022

• pypedream

  Public
  Python

  •0•0•0•0•Updated Dec 6, 2021Dec 6, 2021

• liqbio-dotfiles

  Public
  Installation instructions for liqbio pipeline

  Shell

  •1•0•0•0•Updated Apr 6, 2020Apr 6, 2020

• igv_session

  Public
  Create igv symlink and igv session files for probio and psff samples

  Python

  •0•0•0•0•Updated Dec 5, 2019Dec 5, 2019

• alascca-dotfiles

  Public
  dotfiles for the production environment in the ALASCCA project

  Shell

  •1•0•0•0•Updated Nov 18, 2019Nov 18, 2019

• pyjobmanager

  Public
  Python based job workflow manger

  Python

  •1•0•0•0•Updated Oct 2, 2019Oct 2, 2019

• reportgen

  Public
  Python

  •1•1•0•0•Updated Aug 12, 2019Aug 12, 2019

• TNER

  Public
  TNER: Tri-Nucleotide Error Reducer for ctDNA detection

  R

  •6•0•0•0•Updated Nov 26, 2018Nov 26, 2018

• fairbanks

  Public
  Staging server for the ALASCCA study

  Shell

  •1•0•0•0•Updated Nov 14, 2017Nov 14, 2017

• multiqc-alascca

  Public
  ALASCCA-specific plugin to multiqc

  Python

  •0•0•0•0•Updated Mar 10, 2017Mar 10, 2017

• dbsnpcheck

  Public
  Check how many variants are in dbSNP

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 3, 2016Nov 3, 2016

• autoseq-docker-base

  Public
  Base docker image with the tools needed for autoseq to run

  MIT License

  •0•0•0•0•Updated Oct 4, 2016Oct 4, 2016

• genomicassertions

  Public
  A framework to test the contents of genomics files

  Python

  •

  MIT License

  •0•0•0•0•Updated Jun 29, 2016Jun 29, 2016

• localq

  Public
  Python

  •

  MIT License

  •3•0•0•0•Updated May 19, 2016May 19, 2016

• pipeline-tools

  Public
  Python

  •0•0•0•0•Updated May 13, 2016May 13, 2016

• gatk

  Public
  Daniel Klevebring's GATK Repository: contains the core MIT-licensed GATK framework, and custom tools, free for all uses.

  Java

  •223•0•0•0•Updated Nov 4, 2015Nov 4, 2015