BiomedSciAI

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12 repositories

biomed-multi-alignment
Public
We introduce ibm/biomed.omics.bl.sm.ma-ted-458m. A biomedical foundation model trained over 2 billion biological samples across multiple modalities, including proteins, small molecules, and single-cell gene data.
Python
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Apache License 2.0
•11•22•0•5•Updated Nov 27, 2024Nov 27, 2024
fuse-med-ml
Public
A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)
machine-learning fuse ai collaboration medical healthcare medical-imaging vision multimodality hacktoberfest
Python
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Apache License 2.0
•34•137•24•11•Updated Nov 27, 2024Nov 27, 2024
fuse-drug
Public
FuseMedML based molecular biochemistry library for drug discovery/repurposing
Python
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Apache License 2.0
•5•14•10•2•Updated Nov 25, 2024Nov 25, 2024
gene-benchmark
Public
Benchmark gene representations from different model families
Jupyter Notebook
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Apache License 2.0
•0•5•0•1•Updated Nov 5, 2024Nov 5, 2024
biomed-multi-view
Public
This repository contains the implementation of the Multi-view Molecular Embedding with Late Fusion (MMELON) architecture. MMELON combines molecular representations from three views — image, graph, and text —to learn a joint embedding that can be finetuned for downstream tasks in chemical and biological property prediction.
Python
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Apache License 2.0
•4•16•0•0•Updated Nov 1, 2024Nov 1, 2024
causallib
Public
A Python package for modular causal inference analysis and model evaluations
ml causality causal-inference causal causal-models data-science machine-learning
Python
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Apache License 2.0
•97•738•2•2•Updated Jul 31, 2024Jul 31, 2024
histocartography
Public
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
healthcare pathology machine-learning deep-learning pytorch graph-neural-networks
Python
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GNU Affero General Public License v3.0
•57•242•17•5•Updated Dec 23, 2023Dec 23, 2023
Geno4SD
Public
An python omics data toolkit for the analysis across biological scales
dna cancer-genomics population-genomics omics population-genetics omics-data machine-learning
Jupyter Notebook
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Apache License 2.0
•1•10•0•0•Updated Dec 5, 2023Dec 5, 2023
r-BRICS
Public
Revised breaking of retrosynthetically interesting chemical substructures (r-BRICS) – a revised BRICS module based on rdKit that breaks ring structures and carbon chains
Python
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Other
•2•7•0•0•Updated Jul 24, 2023Jul 24, 2023
multimodal-models-toolkit
Public
Jupyter Notebook
•0•7•1•0•Updated Jun 23, 2023Jun 23, 2023
DPM360
Public
Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data
python sklearn pytorch healthcare ohdsi omop machine-learning deep-learning
JavaScript
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Apache License 2.0
•4•19•6•0•Updated May 9, 2023May 9, 2023
.github
Public
0•0•1•0•Updated Mar 22, 2023Mar 22, 2023