Docker container for running all of these tests

[rgerkin]

@slarson @pgleeson
I am going to create a Dockerfile for running these tests (basically recapitulating the instructions in the README). This should be easy because I already got them running using the same instructions in a vanilla Ubuntu Docker image. However, to avoid fragmenting our Docker presence I'm wondering if I should be using the official OpenWorm Docker image as the base?

Alternatively, since it has a whole bunch of stuff we don't need here (for now), maybe I refactor the OpenWorm Docker stack to be more hierarchical, with both this repo's Dockerfile and the stuff the main OpenWorm Docker container is mainly used for now both inheriting from some base OpenWorm Docker image. See Jupyter Stacks for inspiration.

[rgerkin]

I implemented one here deriving from jupyter/scipy-notebook (which makes it easy to then go in and explore test notebooks either before or after they have been run), but I can switch this to derive from an openworm Dockerfile later.

[russelljjarvis]

WORKDIR $OPENWORM_HOME

RUN git clone -b sciunit https://github.com/rgerkin/open-worm-analysis-toolbox.git

Notice hyphens between pathname words:

WORKDIR open-worm-analysis-toolbox
RUN pip install -e . --process-dependency-links

Notice underscores between pathname words:

WORKDIR open_worm_analysis_toolbox

One level deeper

RUN cp user_config_example.txt user_config.py
RUN mkdir example_data
WORKDIR example_data
RUN wget "https://drive.google.com/uc?export=download&id=0B7to9gBdZEyGWVAzUlYwbk1ad0E" -O example_contour_and_skeleton_info.mat
RUN wget "https://drive.google.com/uc?export=download&id=0B7to9gBdZEyGX2tFQ1JyRzdUYUE" -O example_video_feature_file.mat
RUN wget "https://drive.google.com/uc?export=download&id=0B7to9gBdZEyGakg5U3loVUktRm8" -O example_video_norm_worm.mat

This tests package

WORKDIR $OPENWORM_HOME
RUN git clone -b dev http://github.com/openworm/tests
WORKDIR tests
RUN pip install -e . --process-dependency-links

New code for installing wcon module:

WORKDIR $OPENWORM_HOME
RUN git clone https://github.com/rgerkin/tracker-commons
WORKDIR tracker-commons/src/Python
RUN python setup.py install
WORKDIR $OPENWORM_HOME