From dfcef4fc47cda155d2cfa5cce6e9a31a0f383c66 Mon Sep 17 00:00:00 2001
From: Volker Schmidt <volker@volsch.eu>
Date: Tue, 19 Mar 2019 12:24:32 +0100
Subject: [PATCH] Added coverage to Maven build.

---
 app/pom.xml        |   4 ++
 common/pom.xml     |   6 ++-
 dhis/pom.xml       |   4 ++
 fhir-dstu3/pom.xml |  11 ++++-
 fhir-r4/pom.xml    |   9 ++++
 fhir/pom.xml       |   6 ++-
 pom.xml            |  35 ++++++++++++++-
 summary/pom.xml    | 105 +++++++++++++++++++++++++++++++++++++++++++++
 8 files changed, 176 insertions(+), 4 deletions(-)
 create mode 100644 summary/pom.xml

diff --git a/app/pom.xml b/app/pom.xml
index 686c577e..25c28514 100644
--- a/app/pom.xml
+++ b/app/pom.xml
@@ -134,6 +134,10 @@
           </archive>
         </configuration>
       </plugin>
+      <plugin>
+        <groupId>org.jacoco</groupId>
+        <artifactId>jacoco-maven-plugin</artifactId>
+      </plugin>
     </plugins>
   </build>
 
diff --git a/common/pom.xml b/common/pom.xml
index 4997ce54..474357b1 100644
--- a/common/pom.xml
+++ b/common/pom.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!--
-  ~ Copyright (c) 2004-2018, University of Oslo
+  ~ Copyright (c) 2004-2019, University of Oslo
   ~ All rights reserved.
   ~
   ~ Redistribution and use in source and binary forms, with or without
@@ -87,6 +87,10 @@
         <groupId>com.mysema.maven</groupId>
         <artifactId>apt-maven-plugin</artifactId>
       </plugin>
+      <plugin>
+        <groupId>org.jacoco</groupId>
+        <artifactId>jacoco-maven-plugin</artifactId>
+      </plugin>
     </plugins>
   </build>
 </project>
diff --git a/dhis/pom.xml b/dhis/pom.xml
index cfe7dd4b..bdb9ee2f 100644
--- a/dhis/pom.xml
+++ b/dhis/pom.xml
@@ -75,6 +75,10 @@
         <groupId>com.mysema.maven</groupId>
         <artifactId>apt-maven-plugin</artifactId>
       </plugin>
+      <plugin>
+        <groupId>org.jacoco</groupId>
+        <artifactId>jacoco-maven-plugin</artifactId>
+      </plugin>
     </plugins>
   </build>
 </project>
diff --git a/fhir-dstu3/pom.xml b/fhir-dstu3/pom.xml
index ff3642b3..ca930578 100644
--- a/fhir-dstu3/pom.xml
+++ b/fhir-dstu3/pom.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!--
-  ~ Copyright (c) 2004-2018, University of Oslo
+  ~ Copyright (c) 2004-2019, University of Oslo
   ~ All rights reserved.
   ~
   ~ Redistribution and use in source and binary forms, with or without
@@ -64,4 +64,13 @@
       <artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
     </dependency>
   </dependencies>
+
+  <build>
+    <plugins>
+      <plugin>
+        <groupId>org.jacoco</groupId>
+        <artifactId>jacoco-maven-plugin</artifactId>
+      </plugin>
+    </plugins>
+  </build>
 </project>
diff --git a/fhir-r4/pom.xml b/fhir-r4/pom.xml
index c298fb0b..3a48aefa 100644
--- a/fhir-r4/pom.xml
+++ b/fhir-r4/pom.xml
@@ -70,4 +70,13 @@
       <scope>test</scope>
     </dependency>
   </dependencies>
+
+  <build>
+    <plugins>
+      <plugin>
+        <groupId>org.jacoco</groupId>
+        <artifactId>jacoco-maven-plugin</artifactId>
+      </plugin>
+    </plugins>
+  </build>
 </project>
diff --git a/fhir/pom.xml b/fhir/pom.xml
index 87cb9152..5d47b3fe 100644
--- a/fhir/pom.xml
+++ b/fhir/pom.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!--
-  ~ Copyright (c) 2004-2018, University of Oslo
+  ~ Copyright (c) 2004-2019, University of Oslo
   ~ All rights reserved.
   ~
   ~ Redistribution and use in source and binary forms, with or without
@@ -179,6 +179,10 @@
           </execution>
         </executions>
       </plugin>
+      <plugin>
+        <groupId>org.jacoco</groupId>
+        <artifactId>jacoco-maven-plugin</artifactId>
+      </plugin>
     </plugins>
   </build>
 </project>
diff --git a/pom.xml b/pom.xml
index bb652a08..921d1acc 100644
--- a/pom.xml
+++ b/pom.xml
@@ -50,6 +50,7 @@
     <module>fhir-dstu3</module>
     <module>fhir-r4</module>
     <module>app</module>
+    <module>summary</module>
   </modules>
 
   <properties>
@@ -65,8 +66,10 @@
 
     <hapi-fhir.version>3.7.0</hapi-fhir.version>
     <spring.cloud.version>2.0.1.RELEASE</spring.cloud.version>
+    <jacoco.version>0.8.2</jacoco.version>
 
     <skipTests>false</skipTests>
+    <skipCoverage>true</skipCoverage>
   </properties>
 
   <scm>
@@ -201,11 +204,41 @@
           <configuration>
             <redirectTestOutputToFile>true</redirectTestOutputToFile>
             <!-- since DHIS 2 has no time zone support but FHIR has, tests must be executed with a specific time zone -->
-            <argLine>-Duser.timezone=CET</argLine>
+            <argLine>-Duser.timezone=CET ${surefireArgLine}</argLine>
             <!-- due to asynchronous jobs stack traces must not be trimmed in non test source -->
             <trimStackTrace>false</trimStackTrace>
           </configuration>
         </plugin>
+        <plugin>
+          <groupId>org.jacoco</groupId>
+          <artifactId>jacoco-maven-plugin</artifactId>
+          <version>${jacoco.version}</version>
+          <configuration>
+            <skip>${skipCoverage}</skip>
+          </configuration>
+          <executions>
+            <execution>
+              <id>prepare-unit</id>
+              <goals>
+                <goal>prepare-agent</goal>
+              </goals>
+              <configuration>
+                <includes>org/dhis2/fhir/adapter/**</includes>
+                <propertyName>surefireArgLine</propertyName>
+              </configuration>
+            </execution>
+            <execution>
+              <id>report</id>
+              <phase>prepare-package</phase>
+              <goals>
+                <goal>report</goal>
+              </goals>
+              <configuration>
+                <includes>org/dhis2/fhir/adapter/**</includes>
+              </configuration>
+            </execution>
+          </executions>
+        </plugin>
       </plugins>
     </pluginManagement>
   </build>
diff --git a/summary/pom.xml b/summary/pom.xml
new file mode 100644
index 00000000..7c4f3391
--- /dev/null
+++ b/summary/pom.xml
@@ -0,0 +1,105 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!--
+  ~ Copyright (c) 2004-2019, University of Oslo
+  ~ All rights reserved.
+  ~
+  ~ Redistribution and use in source and binary forms, with or without
+  ~ modification, are permitted provided that the following conditions are met:
+  ~ Redistributions of source code must retain the above copyright notice, this
+  ~ list of conditions and the following disclaimer.
+  ~
+  ~ Redistributions in binary form must reproduce the above copyright notice,
+  ~ this list of conditions and the following disclaimer in the documentation
+  ~ and/or other materials provided with the distribution.
+  ~ Neither the name of the HISP project nor the names of its contributors may
+  ~ be used to endorse or promote products derived from this software without
+  ~ specific prior written permission.
+  ~
+  ~ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
+  ~ ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
+  ~ WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+  ~ DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
+  ~ ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
+  ~ (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
+  ~ LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON
+  ~ ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
+  ~ (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
+  ~ SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+  -->
+
+<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+  <modelVersion>4.0.0</modelVersion>
+
+  <artifactId>dhis2-fhir-adapter-summary</artifactId>
+  <packaging>jar</packaging>
+
+  <parent>
+    <groupId>org.dhis2.fhir.adapter</groupId>
+    <artifactId>dhis2-fhir-adapter</artifactId>
+    <version>1.1.0-SNAPSHOT</version>
+    <relativePath>..</relativePath>
+  </parent>
+
+  <name>dhis2-fhir-adapter-summary</name>
+  <description>
+    The summary of building the project.
+  </description>
+
+  <dependencies>
+    <dependency>
+      <groupId>org.dhis2.fhir.adapter</groupId>
+      <artifactId>dhis2-fhir-adapter-common</artifactId>
+      <version>${project.version}</version>
+      <scope>compile</scope>
+    </dependency>
+    <dependency>
+      <groupId>org.dhis2.fhir.adapter</groupId>
+      <artifactId>dhis2-fhir-adapter-dhis</artifactId>
+      <version>${project.version}</version>
+      <scope>compile</scope>
+    </dependency>
+    <dependency>
+      <groupId>org.dhis2.fhir.adapter</groupId>
+      <artifactId>dhis2-fhir-adapter-fhir</artifactId>
+      <version>${project.version}</version>
+      <scope>compile</scope>
+    </dependency>
+    <dependency>
+      <groupId>org.dhis2.fhir.adapter</groupId>
+      <artifactId>dhis2-fhir-adapter-fhir-dstu3</artifactId>
+      <version>${project.version}</version>
+      <scope>compile</scope>
+    </dependency>
+    <dependency>
+      <groupId>org.dhis2.fhir.adapter</groupId>
+      <artifactId>dhis2-fhir-adapter-fhir-r4</artifactId>
+      <version>${project.version}</version>
+      <scope>compile</scope>
+    </dependency>
+    <dependency>
+      <groupId>org.dhis2.fhir.adapter</groupId>
+      <artifactId>dhis2-fhir-adapter-app</artifactId>
+      <version>${project.version}</version>
+      <type>war</type>
+      <scope>compile</scope>
+    </dependency>
+  </dependencies>
+
+  <build>
+    <plugins>
+      <plugin>
+        <groupId>org.jacoco</groupId>
+        <artifactId>jacoco-maven-plugin</artifactId>
+        <executions>
+          <execution>
+            <id>report</id>
+            <phase>verify</phase>
+            <goals>
+              <goal>report-aggregate</goal>
+            </goals>
+          </execution>
+        </executions>
+      </plugin>
+    </plugins>
+  </build>
+</project>