[PRE REVIEW]: PyRASA - Spectral parameterization in python based on IRASA #7382

editorialbot · 2024-10-20T14:17:03Z

Submitting author: @schmidtfa (Fabian Schmidt)
Repository: https://github.com/schmidtfa/pyrasa
Branch with paper.md (empty if default branch):
Version: v1.0.0
Editor: @csoneson
Reviewers: Pending
Managing EiC: Kevin M. Moerman

Status

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Markdown: [![status](https://joss.theoj.org/papers/b13e5cbfdf48d797bab112e533ab2274/status.svg)](https://joss.theoj.org/papers/b13e5cbfdf48d797bab112e533ab2274)

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editorialbot · 2024-10-20T14:17:05Z

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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editorialbot · 2024-10-20T14:17:23Z

Software report:

github.com/AlDanial/cloc v 1.90  T=0.11 s (969.9 files/s, 287181.2 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          57           1713           1927           5252
SVG                              2              0              0           3832
Jupyter Notebook                14              0          17140           1264
YAML                             6              9              7            200
reStructuredText                21            231            222            198
Markdown                         4             75              0            166
TOML                             1             20              0            125
TeX                              1              7              0             77
CSS                              1              3              4             26
DOS Batch                        1              8              1             26
HTML                             1              2              4             12
make                             1              4              7              9
-------------------------------------------------------------------------------
SUM:                           110           2072          19312          11187
-------------------------------------------------------------------------------

Commit count by author:

   102	Thomas Hartmann
    75	Schmidt Fabian
    73	Fabi
     8	Fabian Schmidt
     2	b1059770
     2	dependabot[bot]
     2	schmidtfa

editorialbot · 2024-10-20T14:17:27Z

Paper file info:

📄 Wordcount for paper.md is 660

✅ The paper includes a Statement of need section

editorialbot · 2024-10-20T14:17:29Z

License info:

✅ License found: BSD 2-Clause "Simplified" License (Valid open source OSI approved license)

editorialbot · 2024-10-20T14:17:29Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- None

🟡 SKIP DOIs

- No DOI given, and none found for title: Parameterizing neural power spectra into periodic ...
- No DOI given, and none found for title: MNE software for processing MEG and EEG data
- No DOI given, and none found for title: Array programming with NumPy

❌ MISSING DOIs

- 10.21105/joss.01272 may be a valid DOI for title: NeuroDSP: A package for neural digital signal proc...
- 10.37473/dac/10.1101/2021.10.15.464483 may be a valid DOI for title: Separating neural oscillations from aperiodic 1/f ...
- 10.1155/2011/156869 may be a valid DOI for title: FieldTrip: open source software for advanced analy...
- 10.1007/s10548-015-0448-0 may be a valid DOI for title: Separating fractal and oscillatory components in t...
- 10.7554/elife.70092 may be a valid DOI for title: An open-source, high-performance tool for automate...

❌ INVALID DOIs

- None

editorialbot · 2024-10-20T14:18:16Z

👉📄 Download article proof 📄 View article proof on GitHub 📄 👈

editorialbot · 2024-10-20T14:19:03Z

Five most similar historical JOSS papers:

Pycrostates: a Python library to study EEG microstates
Submitting author: @vferat
Handling editor: @Kevin-Mattheus-Moerman (Active)
Reviewers: @AJQuinn, @vahid-sb, @tuliofalmeida, @anshu-97
Similarity score: 0.7609

NeuroDSP: A package for neural digital signal processing
Submitting author: @voytek
Handling editor: @arokem (Retired)
Reviewers: @TomDLT
Similarity score: 0.7529

Openseize: A digital signal processing package for large EEG datasets in Python
Submitting author: @mscaudill
Handling editor: @samhforbes (Active)
Reviewers: @szorowi1, @AJQuinn
Similarity score: 0.7422

MNE-ICALabel: Automatically annotating ICA components with ICLabel in Python
Submitting author: @adam2392
Handling editor: @emdupre (Active)
Reviewers: @TomDonoghue, @adswa
Similarity score: 0.7401

Systole: A python package for cardiac signal synchrony and analysis
Submitting author: @LegrandNico
Handling editor: @osorensen (Active)
Reviewers: @axel-loewe, @janfreyberg
Similarity score: 0.7400

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

schmidtfa · 2024-11-05T10:26:02Z

fixed the missing dois. so @editorialbot generate pdf

schmidtfa · 2024-11-05T10:27:46Z

Also I think Tom Donoghue would be a great fit for a reviewer as he is maintaining fooof/specparam the most widely used package for spectral parametrization.

arfon · 2024-11-12T10:21:13Z

@schmidtfa - thanks for your submission to JOSS. We're currently managing a large backlog of submissions and the editor most appropriate for your area is already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!

Kevin-Mattheus-Moerman · 2024-11-26T11:00:26Z

@schmidtfa Dear author, thanks for this submission. I am the AEiC on this track and here to help process the initial steps. Before we proceed, please can you have a look at the following points:

Please study the above reference check ☝️ and see if you can address any of the reported potential DOI issues. You can add/amend DOI entries in your .bib file, and call @editorialbot check references here to check them again.

schmidtfa · 2024-11-26T11:06:50Z

@editorialbot check references

editorialbot · 2024-11-26T11:07:15Z

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.21105/joss.01272 is OK
- 10.1038/s41593-020-00744-x is OK
- 10.1007/s12021-022-09581-8 is OK
- 10.1016/j.neuroimage.2013.10.027 is OK
- 10.1038/s41586-020-2649-2 is OK
- 10.1155/2011/156869 is OK
- 10.1007/s10548-015-0448-0 is OK
- 10.7554/eLife.70092 is OK

🟡 SKIP DOIs

- None

❌ MISSING DOIs

- None

❌ INVALID DOIs

- None

schmidtfa · 2024-11-26T11:10:06Z

@Kevin-Mattheus-Moerman looks like its working now. Thanks for having a look at my submission :)

Kevin-Mattheus-Moerman · 2024-11-26T14:02:43Z

@editorialbot invite @sneakers-the-rat as editor

editorialbot · 2024-11-26T14:02:46Z

Invitation to edit this submission sent!

Kevin-Mattheus-Moerman · 2024-11-26T14:02:57Z

@sneakers-the-rat is this submission something you can help with?

Kevin-Mattheus-Moerman · 2025-01-10T08:41:26Z

@editorialbot invite @csoneson as editor

editorialbot · 2025-01-10T08:41:29Z

Invitation to edit this submission sent!

csoneson · 2025-01-10T20:08:16Z

@editorialbot assign @csoneson as editor

editorialbot · 2025-01-10T20:08:19Z

Assigned! @csoneson is now the editor

csoneson · 2025-01-10T20:08:47Z

👋🏻 @schmidtfa - I will handle your submission, and start by finding at least two suitable reviewers.

csoneson · 2025-01-10T20:14:57Z

👋🏻 @TomDonoghue, @voytek, @vferat - would you be interested in reviewing this submission for the Journal of Open Source Software (JOSS)?

PyRASA - Spectral parameterization in python based on IRASA
#7382

More information about our checklist-based review process can be found here.
Thanks in advance!

voytek · 2025-01-15T18:26:56Z

I'm sorry, I can't. I'm serving on an NIH grants panel that meets in a few weeks and I have quite a few grants to review.

csoneson · 2025-01-20T09:13:09Z

👋🏻 @TomDonoghue, @vferat, @tuliofalmeida, @mscaudill - would you be interested in reviewing this submission for the Journal of Open Source Software (JOSS)?

PyRASA - Spectral parameterization in python based on IRASA
#7382

More information about our checklist-based review process can be found here.
Thanks in advance!

tuliofalmeida · 2025-01-20T14:54:59Z

Hello! Thank you for inviting me but I have no time in the following weeks.

mscaudill · 2025-01-22T11:27:53Z

Hi @csoneson Thank you for the invitation. I don't have the bandwidth at this time but I will in early March. If you don't find reviewers before then, please ping me again.

mscaudill · 2025-01-22T11:30:41Z

Hi @csoneson <https://github.com/csoneson> Thank you for the invitation. I don't have the bandwidth at this time but I will in early March. If you don't find reviewers before then, please ping me again.

…

On Mon, Jan 20, 2025 at 3:13 AM Charlotte Soneson ***@***.***> wrote: 👋🏻 @TomDonoghue <https://github.com/TomDonoghue>, @vferat <https://github.com/vferat>, @tuliofalmeida <https://github.com/tuliofalmeida>, @mscaudill <https://github.com/mscaudill> - would you be interested in reviewing this submission for the Journal of Open Source Software (JOSS)? PyRASA - Spectral parameterization in python based on IRASA #7382 <#7382> More information about our checklist-based review process can be found here <https://joss.readthedocs.io/en/latest/reviewer_guidelines.html>. Thanks in advance! — Reply to this email directly, view it on GitHub <#7382 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ADAILC4GLFHEKQY7XC5IUUT2LS43XAVCNFSM6AAAAABQIR35CSVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDMMBRHAZTMNRZGA> . You are receiving this because you were mentioned.Message ID: ***@***.***>

csoneson · 2025-01-22T11:36:10Z

Ok, thanks @mscaudill!

TomDonoghue · 2025-01-22T18:24:00Z

Unfortunately I do not time to review this submission at this time - best of luck with the submission!

editorialbot added pre-review Track: 2 (BCM) Biomedical Engineering, Biosciences, Chemistry, and Materials labels Oct 20, 2024

editorialbot added Python TeX labels Oct 20, 2024

arfon added the waitlisted Submissions in the JOSS backlog due to reduced service mode. label Nov 12, 2024

editorialbot assigned csoneson Jan 10, 2025

csoneson removed the waitlisted Submissions in the JOSS backlog due to reduced service mode. label Jan 10, 2025

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[PRE REVIEW]: PyRASA - Spectral parameterization in python based on IRASA #7382

[PRE REVIEW]: PyRASA - Spectral parameterization in python based on IRASA #7382

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[PRE REVIEW]: PyRASA - Spectral parameterization in python based on IRASA #7382

[PRE REVIEW]: PyRASA - Spectral parameterization in python based on IRASA #7382

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