Update early failure and add micromamba action

Author: imallona

.github/workflows/micromamba.yml

@@ -0,0 +1,113 @@
+name: micromamba
+concurrency:
+  group: ${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+  workflow_dispatch:
+
+## these permissions are only for deployment to gh pages
+# permissions:
+#   id-token: write
+#   pages: write
+
+jobs:
+  run-benchmark:
+    name: run_clustbench
+    runs-on: ubuntu-latest
+    ## runs-on: self-hosted
+    strategy:
+      matrix:
+        ob_branch: [dev, reduce_install_scope, main]
+      fail-fast: false
+    steps:
+      - name: Check out repository
+        uses: actions/checkout@v4
+
+        
+      - name: Install (with) micromamba
+        uses: mamba-org/setup-micromamba@v2
+        with:
+          environment-file: test-environment.yml
+          cache-environment: true
+          post-cleanup: 'all'
+
+      - name: Overwrite omnibenchmark CLI to branch
+        shell: bash -l {0}
+        run: |
+          pip install git+https://github.com/omnibenchmark/omnibenchmark.git@${{ matrix.ob_branch }}
+
+      # - name: Enable a benchmarking `out` cache
+      #   id: cache-benchmark
+      #   uses: actions/cache@v3
+      #   with:
+      #     path: out/
+      #     key: benchmark-${{ runner.os }}-${{ hashFiles('Clustering.yaml') }}
+
+      - name: Run benchmark
+        shell: bash -l {0}
+        continue-on-error: false
+        run: |
+          date
+          echo "y" | ob run benchmark -b Clustering.yaml --local --cores 2 --continue-on-error
+          date
+        if: matrix.ob_branch == 'dev' || matrix.ob_branch == 'reduce_install_scope'
+
+      - name: Run benchmark
+        shell: bash -l {0}
+        continue-on-error: false
+        run: |
+          date
+          echo "y" | ob run benchmark -b Clustering.yaml --local --threads 2
+          date
+        if: matrix.ob_branch == 'main'
+
+  # upload-artifact:
+  #   name: Benchmark Artifact
+  #   runs-on: ubuntu-latest
+  #   ## runs-on: self-hosted
+  #   needs: run-benchmark
+  #   if: always()
+  #   steps:
+  #     - name: Check out repository
+  #       uses: actions/checkout@v4
+
+  #     - name: Load cached output
+  #       uses: actions/cache@v3
+  #       with:
+  #         path: out/
+  #         key: benchmark-${{ runner.os }}-${{ hashFiles('Clustering.yaml') }}
+
+  #     - name: Prepare output
+  #       run: |
+  #         zip -r benchmark_output.zip out/
+  #         mkdir -p gh-pages
+  #         cp out/plotting/plotting_report.html gh-pages/index.html
+
+  #     - name: Upload zipped output
+  #       uses: actions/upload-artifact@v4
+  #       with:
+  #         name: benchmark-output
+  #         path: benchmark_output.zip
+  #         retention-days: 7
+
+  #     - name: Upload Pages Artifact
+  #       uses: actions/upload-pages-artifact@v3
+  #       with:
+  #         path: gh-pages
+
+  #     - name: Deploy to GitHub Pages
+  #       uses: actions/deploy-pages@v4
+          
+  #     - name: Create Job Summary
+  #       if: always()
+  #       run: |
+  #         echo "### Reports" >> $GITHUB_STEP_SUMMARY
+  #         echo "- [Plotting Report](https://${{ github.repository_owner }}.github.io/${{ github.event.repository.name }})" >> $GITHUB_STEP_SUMMARY
+  #         echo "### All Outputs" >> $GITHUB_STEP_SUMMARY
+  #         echo "- [Complete Benchmark Output](https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}#artifacts)" >> $GITHUB_STEP_SUMMARY
+    

.github/workflows/miniconda_miniforge.yml

@@ -23,6 +23,7 @@ jobs:
     strategy:
       matrix:
         ob_branch: [dev, reduce_install_scope, main]
+      fail-fast: false
     steps:
       - name: Check out repository
         uses: actions/checkout@v4