From de147d69dc099f850c1777a72fa74fb0ccb8363b Mon Sep 17 00:00:00 2001 From: Omer Weissbrod Date: Tue, 5 Mar 2024 22:02:14 +0200 Subject: [PATCH] update from_numpy_array to support networkx > 3.0 --- finemapper.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/finemapper.py b/finemapper.py index 30af1a1..9d450b9 100644 --- a/finemapper.py +++ b/finemapper.py @@ -653,7 +653,7 @@ def estimate_h2_hess(self, prop_keep=0.005, R_cutoff=0.99, pvalue_bound=None): #take a maximally independent subset np.fill_diagonal(R_pot_csnp,0) import networkx as nx - G = nx.from_numpy_matrix(np.abs(R_pot_csnp)>R_cutoff) + G = nx.from_numpy_array(np.abs(R_pot_csnp)>R_cutoff) np.fill_diagonal(R_pot_csnp,1) inds = np.sort(nx.maximal_independent_set(G))