Add RenderFacility

Author: dominikl

src/main/java/omero/gateway/facility/RenderFacility.java

@@ -0,0 +1,161 @@
+/*
+ *------------------------------------------------------------------------------
+ *  Copyright (C) 2024 University of Dundee. All rights reserved.
+ *
+ *
+ *  This program is free software; you can redistribute it and/or modify
+ *  it under the terms of the GNU General Public License as published by
+ *  the Free Software Foundation; either version 2 of the License, or
+ *  (at your option) any later version.
+ *  This program is distributed in the hope that it will be useful,
+ *  but WITHOUT ANY WARRANTY; without even the implied warranty of
+ *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ *  GNU General Public License for more details.
+ *
+ *  You should have received a copy of the GNU General Public License along
+ *  with this program; if not, write to the Free Software Foundation, Inc.,
+ *  51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.
+ *
+ *------------------------------------------------------------------------------
+ */
+package omero.gateway.facility;
+
+import omero.api.RenderingEnginePrx;
+import omero.gateway.Gateway;
+import omero.gateway.SecurityContext;
+import omero.gateway.exception.DSAccessException;
+import omero.gateway.exception.DSOutOfServiceException;
+import omero.gateway.model.ImageData;
+import omero.romio.PlaneDef;
+
+import java.awt.image.BufferedImage;
+
+public class RenderFacility extends Facility {
+    /**
+     * Creates a new instance
+     *
+     * @param gateway Reference to the {@link Gateway}
+     */
+    RenderFacility(Gateway gateway) {
+        super(gateway);
+    }
+
+    /**
+     * Get a RenderingEngine for an image.
+     *
+     * @param ctx                 The security context.
+     * @param imageId             The image ID
+     * @param initDefaultSettings Flag to create default rendering settings if the
+     *                            image doesn't have any for the current user.
+     * @return A RenderingEngine for the image
+     * @throws DSOutOfServiceException If the connection is broken, or not logged in
+     * @throws DSAccessException       If an error occurred while trying to retrieve data from OMERO
+     *                                 service.
+     */
+    public RenderingEnginePrx getRenderingEngine(SecurityContext ctx, long imageId, boolean initDefaultSettings)
+            throws DSOutOfServiceException, DSAccessException {
+        try {
+            long pixelsId = gateway.getFacility(LoadFacility.class).getImage(ctx, imageId).getDefaultPixels().getId();
+            RenderingEnginePrx re = gateway.getRenderingService(ctx, pixelsId);
+            if (!re.lookupRenderingDef(pixelsId)) {
+                if (initDefaultSettings) {
+                    re.resetDefaultSettings(true);
+                    re.lookupRenderingDef(pixelsId);
+                } else {
+                    throw new DSOutOfServiceException("Image doesn't have rendering settings.");
+                }
+            }
+            re.load();
+            return re;
+        } catch (Throwable t) {
+            handleException(this, t, "Could not load RenderingEngine.");
+        }
+        return null;
+    }
+
+    /**
+     * Checks if an image is an RGB(A) image.
+     *
+     * @param ctx                 The security context.
+     * @param imageId             The image ID
+     * @return True if the image is RGB(A)
+     * @throws DSOutOfServiceException If the connection is broken, or not logged in
+     * @throws DSAccessException       If an error occurred while trying to retrieve data from OMERO
+     *                                 service.
+     */
+    public boolean isRGB(SecurityContext ctx, long imageId) throws DSOutOfServiceException, DSAccessException {
+        try {
+            ImageData img = gateway.getFacility(LoadFacility.class).getImage(ctx, imageId);
+            int nChannles = img.getDefaultPixels().getSizeC();
+            if (nChannles < 3 || nChannles > 4)
+                return false;
+            boolean r = false, g = false, b = false;
+            RenderingEnginePrx re = getRenderingEngine(ctx, imageId, true);
+            for (int i=0; i<nChannles; i++) {
+                int[] ch = re.getRGBA(i);
+                if (!r && ch[0] == 255 && ch[1] == 0 && ch[2] == 0)
+                    r = true;
+                if (!g && ch[1] == 255 && ch[0] == 0 && ch[2] == 0)
+                    g = true;
+                if (!b && ch[2] == 255 && ch[0] == 0 && ch[1] == 0)
+                    b = true;
+            }
+            return r && g && b;
+        } catch (Throwable t) {
+            handleException(this, t, "Could not check image.");
+        }
+        return false;
+    }
+
+    /**
+     * Renders the selected z, t plane of the given image as RGB image.
+     * @param ctx                 The security context.
+     * @param imageId             The image ID
+     * @param z The z plane
+     * @param t The time point
+     * @return An RGB image ready to be displayed on screen.
+     * @throws DSOutOfServiceException If the connection is broken, or not logged in
+     * @throws DSAccessException       If an error occurred while trying to retrieve data from OMERO
+     *                                 service.
+     */
+    public int[] renderPlane(SecurityContext ctx, long imageId, int z, int t)
+            throws DSOutOfServiceException, DSAccessException {
+        try {
+            RenderingEnginePrx re = getRenderingEngine(ctx, imageId, true);
+            PlaneDef plane = new PlaneDef(omeis.providers.re.data.PlaneDef.XY, 0,
+                    0, z, t, null, -1);
+            return re.renderAsPackedInt(plane);
+        } catch (Throwable e) {
+            handleException(this, e, "Could not render plane.");
+        }
+        return null;
+    }
+
+    /**
+     * Renders the selected z, t plane of the given image as BufferedImage.
+     * @param ctx                 The security context.
+     * @param imageId             The image ID
+     * @param z The z plane
+     * @param t The time point
+     * @return A BufferedImage ready to be displayed on screen.
+     * @throws DSOutOfServiceException If the connection is broken, or not logged in
+     * @throws DSAccessException       If an error occurred while trying to retrieve data from OMERO
+     *                                 service.
+     */
+    public BufferedImage renderPlaneAsBufferedImage(SecurityContext ctx, long imageId, int z, int t)
+            throws DSOutOfServiceException, DSAccessException {
+        try {
+            ImageData img = gateway.getFacility(LoadFacility.class).getImage(ctx, imageId);
+            int[] pixels = renderPlane(ctx, imageId, 0, 0);
+            int w = img.getDefaultPixels().getSizeX();
+            int h = img.getDefaultPixels().getSizeY();
+            BufferedImage image = new BufferedImage(w, h,
+                    BufferedImage.TYPE_INT_ARGB);
+            image.setRGB(0, 0, w, h, pixels, 0, w);
+            return image;
+        } catch (Throwable e) {
+            handleException(this, e, "Could not render plane.");
+        }
+        return null;
+    }
+}