Merge pull request #20 from jburel/run_notebooks

Run notebooks

Author: joshmoore

README.md

@@ -1,4 +1,6 @@
 [![DOI](https://zenodo.org/badge/329595844.svg)](https://zenodo.org/badge/latestdoi/329595844)
+[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/ome/ngff-latency-benchmark/master?filepath=notebooks)
+[![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/ome/ngff-latency-benchmark/)
 
 # OME-NGFF: latency benchmark
 
@@ -40,3 +42,4 @@ docker-compose run --rm benchmark -sv
 
 This will store both the benchmarking results ('benchmark_data.json') as well as a plotted graph
 ('benchmark_plot.png') in the directory along with the input data.
+

binder/environment.yml

@@ -0,0 +1,13 @@
+channels:
+  - conda-forge
+dependencies:
+  - h5py
+  - matplotlib
+  - numpy
+  - pandas
+  - pytest
+  - request
+  - s3fs
+  - seaborn
+  - tifffile
+  - zarr