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LIF reader Illegal argument exception #4035

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jburel opened this issue Jun 29, 2023 · 5 comments
Open

LIF reader Illegal argument exception #4035

jburel opened this issue Jun 29, 2023 · 5 comments

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@jburel
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jburel commented Jun 29, 2023

stacktrace=java.lang.IllegalArgumentException
	at java.nio.Buffer.position(Buffer.java:244)
	at loci.common.NIOFileHandle.buffer(NIOFileHandle.java:650)
	at loci.common.NIOFileHandle.skipBytes(NIOFileHandle.java:494)
	at loci.common.NIOFileHandle.skipBytes(NIOFileHandle.java:482)
	at loci.common.RandomAccessInputStream.skipBytes(RandomAccessInputStream.java:670)

Error using bf 6.3.1
https://www.openmicroscopy.org/qa2/qa/feedback/33438/

Close if no longer relevant

@melissalinkert
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I can't log in to QA - was there more to the stack trace? In particular, we'd need to know the line number in the reader that this skipBytes call is coming from. Also don't see an uploaded file for 33438, so even with more context it may be difficult to say for sure if this was fixed.

@jburel
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jburel commented Jun 29, 2023

stacktrace=java.lang.IllegalArgumentException
	at java.nio.Buffer.position(Buffer.java:244)
	at loci.common.NIOFileHandle.buffer(NIOFileHandle.java:650)
	at loci.common.NIOFileHandle.skipBytes(NIOFileHandle.java:494)
	at loci.common.NIOFileHandle.skipBytes(NIOFileHandle.java:482)
	at loci.common.RandomAccessInputStream.skipBytes(RandomAccessInputStream.java:670)
	at loci.formats.in.LIFReader.openBytes(LIFReader.java:352)
	at loci.formats.ImageReader.openBytes(ImageReader.java:461)
	at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:156)
	at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:229)
	at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:348)
	at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:348)
	at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:269)
	at ome.services.blitz.repo.ManagedImportRequestI.parseDataByPlane(ManagedImportRequestI.java:872)
	at 

@jburel
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jburel commented Jun 29, 2023

no file associated unfortunately

@dominikl
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dominikl commented Jun 6, 2024

Another similar one QA 41692.

@melissalinkert
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@dominikl : I can't log in to QA, it looks like as with the previous QA report there is no file. Which version was QA 41692 reported against?

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